BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64230.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496623 jgi|Araly1|496623|fgenesh2_kg.8__2439__AT5G64230.1 1611 0.0
> Ahg496623 jgi|Araly1|496623|fgenesh2_kg.8__2439__AT5G64230.1
Length=1369
Score = 1611 bits (872), Expect = 0.0
Identities = 992/1050 (94%), Gaps = 8/1050 (1%)
Strand=Plus/Plus
Query 328 TCGTCTCTTTCGCCAACCCTTATTCATCGAAGACGAAGAAGAAGAATAAGATACTGGTGA 387
||||||||||||| |||||| |||| ||||||| |||||||||||||||||| |||||||
Sbjct 328 TCGTCTCTTTCGCAAACCCTAATTCGTCGAAGAAGAAGAAGAAGAATAAGATGCTGGTGA 387
Query 388 TCAACCATTGCGAAGAATCGGGAATCGGTCGAGCAATTTGGCAGTTATTGTCAGCGATGA 447
||| | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 388 TCAGCGATTGCGAAGAATCGGGAATCGGTCGAGCGATTTGGCAGCTATTGTCGGCGATGA 447
Query 448 ATGAAATTCCGGTGAGTTCTAGAAAGTACCAAGTGGTTCGATCGTTGGCGGAGAGACTAA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATGAAATTCCGGTGAGTTCTAGAAAGTACCAAGTGGTTCGATCGTTGGCGGAGAGACTAA 507
Query 508 TCAACGATAATCAAGGAGAAAACTCAGTCGCCTTGTTGGATTTGAACCGTAGGGTTTTAA 567
|| |||| ||||| ||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 508 TCGACGAGAATCACGGAGAGAACTCAATCGCCTTGTTTGATTTGAACCGTAGGGTTTTAA 567
Query 568 ACGCGTCGTTTCGTACAACTCTAAGCCGGTTAGAGACGGCGGTTGAGCGTAACCCTAACC 627
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 568 ACGCGTCGTTTCGTACAACTCTAAGCCGGTTAGAGGCGGCGGTTGAGCGTAACAGTAACC 627
Query 628 GGAGAGATATAGATGAACCGGTTCGTCGTGGATTAAACCGGGTTGTCAGAGCTGTGGTTA 687
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 628 GGAGAGATATAGGTGAACCGGTTCGTCGTGGATTAAACCGGGTTGTGAGAGCTGCGGTTA 687
Query 688 GAGCCGTGGGAGATGGGTTTATCGGTTGGGGTGGAGAAGAGACGGCGGATCAGACGGCGG 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAGCCGTGGGAGATGGATTTATCGGTTGGGGTGGAGAAGAGACGGCGGATCAGACGGCGG 747
Query 748 AAACGTCGGAGAAACTGGCGGCGGAATTGCTTTGGTTGGCGGAGAAGATGGCGGTTTATG 807
|||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 748 AAACGTCGGAGAAACTGGCGGCGGAACTGCTTTGGCTGGCTGAGAAGATGGCGGTTTATG 807
Query 808 GATTCGTGGATGAAGCCGTTGAGAAATGGGCTTCGGCTTCTAACTTAGCTTGGCTTGCTC 867
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 808 GATTCGTGGATGAAGCCGTTGAGAAATGGGCTTCGGCTTCTAACTTGGCTTGGCTTGCTC 867
Query 868 TTTCGTGTGAGCCACGTCTTCAATGCTCTTTGATCCAAATCTCTGCCTTACTATTCAAAG 927
|||||| ||||||||||||||||||||||||| ||||||| ||||| ||| | |||||||
Sbjct 868 TTTCGTCTGAGCCACGTCTTCAATGCTCTTTGGTCCAAATTTCTGCTTTATTGTTCAAAG 927
Query 928 AAGCCAAGGACATTaaaaagggaagcgaagaagaagaaggagaggaagcaaaattgagag 987
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 928 AAGCCAAGGACATTAAAGAGGGAA--G-AGAAGAAGAAGGAGAGGAAGCAAAATTGAGAG 984
Query 988 agataaagaagaagaTGCTTATTTCGTGGATTCCGTTGCTGTGCCGAGCCAGCAACGGAG 1047
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 985 AGATAAAGAAGAAGATGCTTATTTCGTGGATTCCATTGCTGTGCCGGGCCAGCAACGGAG 1044
Query 1048 CTGATAAACCGGTGTTAAGAAGTGCGGAACGAGCGTATCTAGAGAAAGTGTTGGAGAAGA 1107
| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1045 CGGATAAACCGGTGTTAAGAAGTGCGGAACGAGCGGATCTCGAGAAAGTGTTGGAGAAGA 1104
Query 1108 TGATATCTGAACTAAAAGAAGAGGAGCAAGAACGAGTTCTCTCACTCTGGCTTCACCATT 1167
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1105 TGATATCTGAACTAAAAGAAGAGGAGCAAGAAAGAGTTCTCTCACTCTGGCTTCACCATT 1164
Query 1168 ACACACATTGCGCTTCCTCTGACTGGCCTGACCTCAACGGCTCTTATGTTCGTTGGTGCC 1227
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 ACACACACTGCTCTTCCTCTGACTGGCCTGACCTCAACGGCTCTTATGTTCGTTGGTGCC 1224
Query 1228 ATTCTTCTCGCCAGCTTTTGCTCTTAGGCTAGTCGTCTCATATATCTCCTTGATAAACAC 1287
|||||||||||||||||||||||||| || | || |||||||||||||||||||| |||
Sbjct 1225 ATTCTTCTCGCCAGCTTTTGCTCTTACGCCATTCTTCTCATATATCTCCTTGATA--CAC 1282
Query 1288 AAGTAGAAAGTTGCTACAATATTTGCAATAGCATTGATCTTTTGTATGTCTTAATCATAT 1347
|||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1283 AAGTAGAA-GTTGCTACAATATTTTCAATAGCATTGATCTTTTGTACATCTTAAT--TAT 1339
Query 1348 GTACTAAGTTTTGCCCTTTAGAAATCACTT 1377
||||||||||||||||||||||||| ||||
Sbjct 1340 GTACTAAGTTTTGCCCTTTAGAAATTACTT 1369
Score = 401 bits (217), Expect = 6e-111
Identities = 238/248 (96%), Gaps = 1/248 (0%)
Strand=Plus/Plus
Query 78 AGTTTCTTTTGTAACCGTAATTGTAATTAAAGAGAAGAAATAATGGAGAAGCTGTCATCA 137
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AGTTT-TTTTGTAACCGTAATTGTAATTAAAGAGAAGAAAGAATGGAGAAGCTGTCATCA 59
Query 138 GCTGCTGTAGTTCCTCAGCTCCTCCGCAACATCATCGTCGCCGTCGTTGTTTTCGCTGAT 197
|||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||
Sbjct 60 GCTGCTGTGGTTCCTCAGCTTCTCCGCAACATTATCATCGCCGTCGTTGTTTTCGCCGAT 119
Query 198 GAATCTCTCCTTCAAATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTC 257
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATCTCTCCTTCAGATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTC 179
Query 258 GTCACGTGTTTCCTCTTCTTCTTACGCTCTCTTCCTTCAATCGTCTCTTTCGCAAACCCT 317
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 GTCACATGTTTCCTCTTCTTCTTACGCTCTCTTCCTTCAGTCGTCTCTTTCGCAAACCCT 239
Query 318 AATTCGTC 325
||||||||
Sbjct 240 AATTCGTC 247
Score = 93.5 bits (50), Expect = 4e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 213 ATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTCGTCAC 262
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTCGTCAC 325
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 298 TCGTCTCTTTCGCAAACCCTAATTCGTC 325
||||||||||||||||||||||||||||
Sbjct 328 TCGTCTCTTTCGCAAACCCTAATTCGTC 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5