BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64260.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951254 jgi|Araly1|951254|scaffold_803141.1 1461 0.0
Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 1210 0.0
Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 429 3e-119
> Ahg951254 jgi|Araly1|951254|scaffold_803141.1
Length=959
Score = 1461 bits (791), Expect = 0.0
Identities = 903/958 (94%), Gaps = 4/958 (0%)
Strand=Plus/Plus
Query 35 TATAACTACCCTTCTCAATGGCTTCTAATTACCGTTTTGCCATCTTCCTCACTCTCTTTT 94
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 4 TATATCTGCCCTTCTCAATGGCTTTTAATTACCGTTTTGCCATCTTCCTCACTCTCCTCT 63
Query 95 TCGCCACCGCT-GG-TTTCTCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTATGAA 152
|||||| || | || ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 64 TCGCCATCG-TCGGCTTT-TCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTCTGAA 121
Query 153 ATACCACAACGGAGTTCTGTTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAA 212
|||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||
Sbjct 122 ATACCACAACGGAGTTCTCTTGAAAGGTAACATCACCGTTAATCTCATCTGGTACGGGAA 181
Query 213 ATTCACACCGATCCAACGGTCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGA 272
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 182 ATTCACACCGATCCAACGGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAGA 241
Query 273 CGTTGCATCTTCCGCCGCAGTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATA 332
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 242 CGTTGCATCCTCCGCCGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATA 301
Query 333 CAAAGGTGGCTCTTCAACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCT 392
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 302 CAAAGGCGGATCCTCAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCT 361
Query 393 CGGAAAATCTCTCAAAAATCCTTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCT 452
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 362 CGGAAAATCTCTAAAAAATCCTCACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCT 421
Query 453 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 481
Query 513 CCGGTGCGGGACTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGC 572
||||||||| ||||||||||||||| | ||||| || |||||||||||||||||||||||
Sbjct 482 CCGGTGCGGCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGC 541
Query 573 TTACGTATGGGTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCA 632
|||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 542 TTACGTCTGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCA 601
Query 633 CCAGCCGATTTACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGT 692
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 602 CCAACCGATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGT 661
Query 693 TGACGGAATGATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAA 752
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 662 TGACGGAATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGTTTAA 721
Query 753 TAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGG 812
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 722 CAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGG 781
Query 813 TATATTCGGGTCAGGTTCTTATCCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAAC 872
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 782 CATATTCGGGTCGGGTTCTTACCCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAAC 841
Query 873 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 901
Query 933 GGATCCGCAGAGTTCGACGTGCAAGACTCTGGTTTGATCCAAGGGATGTGAGTAAGAC 990
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 902 GGATCCGCAGAGTTTGACGTGTAAGACTCTGGTTTGATCTAAGGGATGTGAGTAAGAC 959
> Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968
Length=858
Score = 1210 bits (655), Expect = 0.0
Identities = 749/795 (94%), Gaps = 4/795 (1%)
Strand=Plus/Plus
Query 179 GTAACATCACAGTCAATCTCGTATGGTACGGG-AAATTCACACCGATCCAACGGTCCGTA 237
|||||||||| || |||||| | ||||||||| ||||||||||| || ||||||||||||
Sbjct 64 GTAACATCACCGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTA 123
Query 238 ATCGTCGATTTCATCCACTCGCTAAACTCC-AAAGACGTTGCATCTTCCGCCGCAGTT-C 295
|||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||| |
Sbjct 124 ATCGTCGATTTCATCCGCTCGCTCAACTCCAAAAGACGTTGCATCCTCCGCCGCAGTTCC 183
Query 296 CTT-CCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAAGGTGGCTCTTCAACACTC 354
||| |||| || |||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 184 CTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGATCCTCAACACTC 243
Query 355 GTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTCAAAAATCCT 414
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 244 GTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATCCT 303
Query 415 TACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 474
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 304 CACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 363
Query 475 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGGACTCACGGATCC 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTCACGGATCC 423
Query 535 TCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGCTTACGTATGGGTCGGGAACTCC 594
||| | ||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 TCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGCTTACGTCTGGGTCGGGAACTCC 483
Query 595 GAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGATTTACGGACCACAA 654
||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 484 GAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTACGGACCACAA 543
Query 655 ACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTT 714
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTC 603
Query 715 GCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 774
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 604 GCCACACTTCTCGCTAACACCGTCACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 663
Query 775 CCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGGTATATTCGGGTCAGGTTCTTAT 834
|||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 664 GCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGGCATATTCGGGTCGGGTTCTTAC 723
Query 835 CCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 783
Query 895 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTCGACGTGC 954
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 784 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTTGACGTGT 843
Query 955 AAGACTCTGGTTTGA 969
|||||||||||||||
Sbjct 844 AAGACTCTGGTTTGA 858
> Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1
Length=1134
Score = 429 bits (232), Expect = 3e-119
Identities = 476/588 (81%), Gaps = 40/588 (7%)
Strand=Plus/Plus
Query 172 TTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAAATTCACACCGATCCAACGG 231
|||||||| |||||||| |||||||| | |||||||| |||||||| || |||||||||
Sbjct 159 TTGAAAGGAAACATCACTCTCAATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGG 218
Query 232 TCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGACGTTGCATCTTCCGCCGCA 291
|||||||||||||||||||||| ||| || || | | || | || ||||||||
Sbjct 219 TCCGTAATCGTCGATTTCATCCGCTC--TA---TC-A--G---TTCCGTCG-CCGCCGCA 266
Query 292 ---GTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAA---GGTGGCTCT 345
| ||| ||||| || |||||||||||||| |||||||| |||||| |||| |||
Sbjct 267 AAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACTACGGAGAAGTACAAACAAGGTG--TCT 324
Query 346 TCAACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTC 405
|||| || |||||||| |||||||| || || |||||||| |||||||||||||| ||
Sbjct 325 -CAACTCTTGTCGTCGGTAAACAGCTCCTCCTTGAGAACTACCCTCTCGGAAAATCCCT- 382
Query 406 AAAAATCC-TTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTC-T-C-CGTTCCAT 461
||| | || |||||| |||||| |||| | |||||||||||||||| | | || || ||
Sbjct 383 AAAGAGCCCTTACCTTCGTGCTCTATCAAGCAAACTTAACGGCGGTGGTGCTCGGTCAAT 442
Query 462 AACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGG 521
|||||||||| ||||||||||||| || |||||||| || ||||||||| |||||||||
Sbjct 443 AACCGTCGTTTTAACGGCGAAAGACGTCACCGTCGAGGGACTCTGTATGAACCGGTGCGG 502
Query 522 GACTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCG-GCTTACGTAT 580
||||||||| || | | | | | || | | | |||| | | | |||||||| |
Sbjct 503 GACTCACGGGTCAAA-G-T-C-A--C---GTT-C-C-GTTAACAGTG-GAGCTTACGTGT 549
Query 581 GGGTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGA 640
||||||| ||||| || |||||||| ||||| || ||||||||||||||||| ||||| |
Sbjct 550 GGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTA 609
Query 641 TTTACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAA 700
| |||||||| || || ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 610 TCTACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCGGAGTCGACGGAA 669
Query 701 TGATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGT 748
||||||||||||| || || ||||| | ||||||||| ||||||||||
Sbjct 670 TGATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5