BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64280.1
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951256 jgi|Araly1|951256|scaffold_803143.1 2608 0.0
Ahg951257 jgi|Araly1|951257|scaffold_803144.1 614 9e-175
> Ahg951256 jgi|Araly1|951256|scaffold_803143.1
Length=1696
Score = 2608 bits (1412), Expect = 0.0
Identities = 1605/1695 (95%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 44 ACACACTCTCTCTCCCGG-GATGGAGAGTTTGGCTCT-C---CG-T-TCAATCT-CA--- 92
|||||| ||||||||||| |||||||||||||||||| | || | ||| ||| ||
Sbjct 1 ACACACACTCTCTCCCGGCGATGGAGAGTTTGGCTCTCCGTTCGCTCTCACTCTCCACTT 60
Query 93 C-TC-TCAGCCTCCTATCTATCTCTCCATCGATCTTCCTCCAAATCATT-TGCGTTACTT 149
| || |||||||||||||| ||||||| |||||||||||||||||||| | ||||||||
Sbjct 61 CTTCATCAGCCTCCTATCTCTCTCTCCGCCGATCTTCCTCCAAATCATTCT-CGTTACTT 119
Query 150 CCACCGTCGATTTCCGTACACACATCCCCAACACTCCGATCACTCTCCATCTCTTCCCCT 209
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 120 CCACCGTCGATTTCCGTACACTCATCCCCAACACTCCGATCACTCTCCATCTCCTCCCCT 179
Query 210 CGATTCACTCTACGCGCCACCGCCTCTTCCTTGCCGGAGGAACAAAACAAACCTCAACC- 268
||||||||||||||||||||||||||||||| |||||| ||| | | | || ||
Sbjct 180 CGATTCACTCTACGCGCCACCGCCTCTTCCTCGCCGGA-GAA-ACCTC-TA--TC--CCT 232
Query 269 TCCCCCTCCTTCTCCGCCGCAGCCGCAAGGAGCGAAGCTAATTCCTCTCGCGATCTCCGT 328
||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
Sbjct 233 TCCTTCTCCTTCTCCGCCGCAGCCGCAAGGAGCAAAGCTAATTCCTCTCACAATCTCCAT 292
Query 329 CTCAATCGGCCTCATAGTCAGATTCTTAATCCCAAGACCAGAACAAGTAACCTCACAAGG 388
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 293 CTCAATCGGCCTCATCGTCAGATTCTTAATCCCAAGACCAGAACAAGTAACATCACAAGG 352
Query 389 ATGGCAATTACTCTCAATCTTCCTCTTCACCATCTCAGGTCTCGTCCTTGGTCCTC-TCC 447
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 353 ATGGCAATTACTCTCAATCTTCCTCTTCACGATCTCAGGTCTCGTCCTTGGTCCTCTTCC 412
Query 448 CTGTAGGCGCTTGGGCTTTCATTGGCTTAACCGCTTCAATCGTCACCAAAACGCTTCCTT 507
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 413 C-GTAGGCGCTTGGGCTTTCATTGGCTTAACCGCTTCTATCGTCACCAAAACGCTTCCTT 471
Query 508 TCTCAACCGCTTTCGCCGCTTTTACCAATGAGCTCATTTGGTTAATCGCTATTTCTTTCT 567
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 TCTCAACCGCTTTCGCCGCTTTTACCAATGAGCTCATTTGGCTAATCGCTATTTCTTTCT 531
Query 568 TCTTCGCTCGTGGATTCATCAAAACTGGTCTTGGCGACAGAATCGCTACTTATTTCGTCA 627
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 532 TCTTCGCTCGTGGTTTCATTAAAACTGGTCTTGGCGATAGAATCGCTACTTATTTCGTGA 591
Query 628 AGTGGCTGGGGAAAAGCACTCTTGGTCTCTCTTATGGTCTTGCGTTCTGTGAAACGCTTA 687
| ||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 AATGGATTGGGAAAAGCACTCTTGGTCTGTCTTATGGTCTTGCGTTCTGTGAAACGCTTA 651
Query 688 TGGGTTTGATTATGCCGTCTACCATGGCTAGAGCCGGTGGCGTTTTCTTGCCGGTGATTA 747
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 652 TGGGTTTGATTATGCCGTCTACAATGGCTAGAGCCGGTGGCGTTTTCTTGCCGGTGATCA 711
Query 748 AATCTTTGGCGATCTCCGCCGGAAGTTATCCCGGAGACCCATCTTCCAGAAAATTGGGTT 807
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AATCTTTGGCTATTTCCGCCGGAAGTTATCCCGGAGACCCATCTTCCAGAAAATTGGGTT 771
Query 808 CTTTTCTCATTCAAACTCAATTGCAGTGTTCAGGAGCTTCTGGTGCGATTCTACTCACAT 867
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTTTTCTGATACAAACCCAATTGCAGTGTTCAGGAGCTTCTGGTGCGATTCTACTCACAT 831
Query 868 CAGCTGCACAAAACTTGCTATGTCTCAAACTAGCAAGAGAAGTTGGTGTTGTAATCTCGA 927
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 832 CAGCGGCACAAAACTTGCTATGTCTCAAACTAGCTAGAGAAGTTGGTGTTGTAATCTCGA 891
Query 928 ATCCATGGATCACTTGGTTTAAAGTCGCTAGTGTTCCTGCGTTTGTGTCTCTTCTTTGTA 987
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 892 ATCCATGGATCACTTGGTTTAAAGTCGCGAGTGTTCCTGCGTTTGTGTCTCTTCTTTGTA 951
Query 988 CTCCTCTCATTATCTACAAGCTTTACCCTCCTGAGTTGAAACACACACCAGAAGCTCCGG 1047
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 CTCCTCTCATTATCTACAAGCTTTACCCTCCTGACCTGAAACACACACCAGAAGCTCCGG 1011
Query 1048 CTGCAGCTGCTAAGAAGCTCGAACGATTAGGTCCCATCACGAAAAACGAATGGATCATGC 1107
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTGCAGCTGCTAAGAAGCTCGAGCGATTAGGTCCCATCACGAAAAACGAATGGATCATGC 1071
Query 1108 TCGGCGCTATGGCTTTCACCGTCTCTCTTTGGGTTTTCGGAGAGGCAATAGGAATAGCAA 1167
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCGGCGCCATGGCTTTCACTGTCTCTCTTTGGGTTTTCGGAGAGGCAATAGGAATAGCAA 1131
Query 1168 GTGTTGTGTCCGCGATGATAGGTCTATCAACACTTCTGCTGTTGGGAGTCATAAACTGGG 1227
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1132 GTGTTGTGTCCGCGATGATAGGTCTGTCAACTCTTCTGCTGTTAGGAGTCATAAACTGGG 1191
Query 1228 ACGATTGTCTCAGTGACAAATCAGCTTGGGACTCTCTCACTTGGTTTGCGGTTTTGATTG 1287
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1192 ACGATTGTCTCAGTGACAAATCAGCTTGGGACTCGCTCACTTGGTTTGCGGTTTTAATTG 1251
Query 1288 GTATGGCTGGACAGCTAACAAACCTCGGTGTCGTTGCTTGGATGTCGGATTGTGTGGCCA 1347
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1252 GTATGGCTGGACAGCTAACAAACCTCGGTGTTGTTGCTTGGATGTCGGATTGTGTGGCCA 1311
Query 1348 AACTGCTACAATCTCTCTCCCTGACTTGGCCCGCGTCATTCATTATTCTCCAGGCTTGTT 1407
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1312 AACTGCTACAATCTCTCTCCCTGACTTGGCCCGCATCATTCATTATTCTCCAGGCTTGTT 1371
Query 1408 ATCTCTTGATACATTATCTATTTGCAAGCCAAACCGGTCACGCGGGAGCTCTCTATCCGC 1467
|||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1372 ATCTCTTGATCCATTATCTATTTGCGAGCCAAACCGCTCACGCGGGAGCTCTCTATCCCC 1431
Query 1468 CTTTCTTGGCGATGCAAATCGCTGCTGGCGTGCCTGGGGTTCTAGCAGCGCTTTGCTTGG 1527
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1432 CTTTCTTGGCGATGCAAATCGCTGCTGGAGTGCCGGGGGTTCTAGCAGCGCTTTGCTTGG 1491
Query 1528 CTTTCAACAACAATCTCTCTGGTGCTTTGGCACATTATAGTGGTGGACCGGCTGCTTTAT 1587
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1492 CTTTCAACAACAATCTCTCGGGTGCTTTGGCACATTATAGTGGGGGACCAGCTGCTTTAT 1551
Query 1588 ATTACGGAGCTGGGTATGTAGATCTGAGAGATATGTTTAGAGTCGGGTTCGTGATGGCTC 1647
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 ATTACGGAGCTGGGTTTGTAGATCTGAGAGATATGTTTAGAGTCGGGTTCGTGATGGCTC 1611
Query 1648 TTGTACAAGCGATCATCTGGGGAGGTGTTGGATCTTTCTGGTGGAAATTTTTGGGTCTCT 1707
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1612 TTGTACAAGCGATCATCTGGGGAGGTGTTGGATCTTTCTGGTGGAAATTATTGGGTCTCT 1671
Query 1708 ACTGAACATATAGAA 1722
|||||| ||||||||
Sbjct 1672 ACTGAAAATATAGAA 1686
> Ahg951257 jgi|Araly1|951257|scaffold_803144.1
Length=1735
Score = 614 bits (332), Expect = 9e-175
Identities = 1101/1462 (75%), Gaps = 94/1462 (6%)
Strand=Plus/Plus
Query 294 CAAGGAGCGAAGCTAATTCCTCT-CGCGATCTCCGTCTCAATCGGCCTCATAGTCAGATT 352
||||||||||| || |||||||| | |||| |||| |||| ||||| || ||||
Sbjct 293 CAAGGAGCGAAACTCATTCCTCTAATC-CTCTCAATCTCCGTCGGTCTCATCCTCCGATT 351
Query 353 C-TTAATCCCAAG-ACCAGAACAAGTAAC-CTCACAAGGATGGCAATTACTCTCAATCTT 409
| | | || | ||||||| ||| || | ||||||| |||||||||||||| |||||
Sbjct 352 CGCT-GTTCC-TGTACCAGAAGGAGTCACGC-CACAAGGCTGGCAATTACTCTCCATCTT 408
Query 410 CCTCTTC-ACCATCTCAGGTCTCGTCCTTGGTCCTCTCCCTGTAGGCGCTTGGGCTTTCA 468
|||| || || ||| | |||||||||||| |||||||||| || || |||||||||||||
Sbjct 409 CCTC-TCAACAATCGCTGGTCTCGTCCTTAGTCCTCTCCCAGTCGGAGCTTGGGCTTTCA 467
Query 469 TTGGCTTAACCGCTTCAATCGTCACCAAAACGCTTCCTTTCTCAACCGCTTTCGCCGCTT 528
||||| | ||||||||||||||||||||||||||| ||||||| |||||||| | ||||
Sbjct 468 TTGGCCTCACCGCTTCAATCGTCACCAAAACGCTTTCTTTCTCCGCCGCTTTCTCAGCTT 527
Query 529 TTACCAA-TGAGCTCATTTGGTTAATCGCTATTTCTTTCTTCTTCGCTCGTGGATTCATC 587
| | ||| ||| | || ||||| |||| ||| |||||||||||||||||||||||| ||
Sbjct 528 TCA-CAAGCGAGGTTATCTGGTTGATCGTTATCTCTTTCTTCTTCGCTCGTGGATTCGTC 586
Query 588 AAAACTGGTCTTGGCGACAGAATCGCTACTTA-TTTCGTCAAGTGGCTGGGGAAAAGCAC 646
||||| |||||||| || |||||||||||||| ||| || || ||||| ||||| || ||
Sbjct 587 AAAACAGGTCTTGGTGATAGAATCGCTACTTACTTT-GTGAAATGGCTTGGGAAGAGTAC 645
Query 647 TCTT-GGTCTCTCTTATGGTCTTGCG-TTCTGTGAAACGC-TT-ATGGGT-TTGATTATG 701
| || ||||| |||||||| || || || ||| | || || || | | || |||
Sbjct 646 T-TTAGGTCTTTCTTATGGGCTCACGCTT-AGTG--AGGCTTTGATTGCTCCTG-CAATG 700
Query 702 CCGT-CTACCA-TGGCTAGAGCCGGTGGCGTTTTCTTGCCGGTGATTAAATCT-T-TGGC 757
|| | ||||| | |||||||| |||||| |||||||||| | || || ||| | | ||
Sbjct 701 CC-TAGTACCACT-GCTAGAGCTGGTGGCATTTTCTTGCCCATCATCAAGTCTCTCTCGC 758
Query 758 GATCTCCGCCGGAAGTTATCCCGGAGACCCATCTTCCAGAAAATT-GGGTTCTTTTC-TC 815
|||| || |||||| | || || || | ||||| || ||||| ||| || || | |
Sbjct 759 TATCT--GCTGGAAGTAAACCGGGTGATTCTTCTTCTAGGAAATTAGGG-TC-TTACTTG 814
Query 816 ATTCAAACTCAATTGCAGTGTTCAGG-AGCTTCTGGTGCGATTCTAC-TCACAT-CAGCT 872
|| ||| ||||||| ||||| | || | | ||| |||| || | | | || | | ||
Sbjct 815 ATCCAATCTCAATTTCAGTGCGCCGGAAAC-TCTAGTGCTCTT-TTCTTGAC-TGCTGCA 871
Query 873 GCACAAAACTTGCTATGTCTCAAACTAGCAAGAGAAG-TTGGTGTTGTAATCTCGAATCC 931
|| ||||| ||||| |||||||| |||| ||| || |||| || || ||||| || ||
Sbjct 872 GCTCAAAATTTGCTGTGTCTCAAGTTAGC-TGAGGAGCTTGGAGTAGTGATCTCAAACCC 930
Query 932 ATGGATCACTTGGTTTAAAGTC-GCTAGTGTTCCTGCGTTTGTGTCTCTTCTTTGTACTC 990
||| | |||||||| ||| | |||||| | ||||| | | || |||||||||||||
Sbjct 931 GTGGGTTTCTTGGTTT-AAGGCTGCTAGTCTACCTGCAATCATATCACTTCTTTGTACTC 989
Query 991 C-TCTCATTATCTACAAGCTTTACCCTCCTGAGTTGAAACACACACCAGAAGCTCC-GGC 1048
| | | || |||| |||||||| ||||| || ||| ||||||| || ||||| ||
Sbjct 990 CAT-TTATCCTCTATAAGCTTTATCCTCCAGAAACCAAAGACACACCGGATGCTCCAGG- 1047
Query 1049 TGCAGCTGCTAA-GAAGCTCGAA-CGATTAGGTCCC-ATCACGAAAAACGAATGGATCAT 1105
| ||||| || ||| ||| || | | | || ||| |||| |||||||||||||||||
Sbjct 1048 TATTGCTGC-AACGAAACTC-AAGCAAAT-GGGCCCTGTCACTAAAAACGAATGGATCAT 1104
Query 1106 GCTCGGCGCTATGGCTT-TCACCGTCTCTCTTTGGGTTTTCGGAGAGGCAATAGGAATAG 1164
| || | | || |||| | | ||| |||||||| | | ||||||| | | ||||||
Sbjct 1105 GGTCAGTACAAT-GCTTCTTGCTGTCACTCTTTGGATCTGCGGAGAGACTCTGGGAATAC 1163
Query 1165 CAAGTGTTGT-GTCCGCGATGATAGGTCTATCAACACTTCTGCT-GTTGGGAGTCATAAA 1222
|||||||||| | | || ||||| ||||| || | |||||| || || || ||| | ||
Sbjct 1164 CAAGTGTTGTAG-CTGCCATGATCGGTCTCTCCATACTTCTTCTCCTT-GGTGTCCTCAA 1221
Query 1223 CTGGGACGATTGTCTCAGTGACAAATCAGCTTGGGACTCTCTCA-CTTGGTTTGCGGTTT 1281
||||||||||| || || || ||||| || |||||| | | | | |||||||| || |
Sbjct 1222 TTGGGACGATTGCCTAAGCGAAAAATCGGCATGGGACAC-ATTAGCATGGTTTGCTGTCT 1280
Query 1282 TGATTGGTATGGCTGGACAGCTAACAAACCTCGGTGTCGTTGCTTGGATGTCGGATTGTG 1341
|| | || ||||| |||||||| |||||||||||||| || | |||||||| |||||||
Sbjct 1281 TGGTGGGAATGGCAGGACAGCTCACAAACCTCGGTGTTGTAACATGGATGTCTGATTGTG 1340
Query 1342 TGGCCAAACTGCTACAATCTCTCTCCCTGACTTGGCCCGCGT-CATTCAT-TA-TTCTCC 1398
| |||||| | || |||||||||||| || |||||| || | | || | | |||| |
Sbjct 1341 TAGCCAAAGTTCTCCAATCTCTCTCCTTGGGTTGGCCTGC-TGCGTT--TGGACTTCTTC 1397
Query 1399 AGGCTTG-TTATC-TCTTGATACATTATCTATTT-GCAAGCCAAACCGGTCACGCGGGAG 1455
| || | || | |||| || || || || ||| ||||||||||||||||||| ||||
Sbjct 1398 AAGC-AGCGTA-CTTCTTCATTCACTACCT-TTTCGCAAGCCAAACCGGTCACGTTGGAG 1454
Query 1456 CTC-TCTATCCGCCTTT-CTTGGCGATGCAAATCGCTGCTGGCGTGCCTGGG-GTTCTAG 1512
| | | | || | |||| ||| || ||||| || || || || || || ||| || |||
Sbjct 1455 CGCTTTTCTCAG-CTTTCCTT-GCTATGCATATAGCAGCAGGTGTTCC-GGGCATTTTAG 1511
Query 1513 CAGCGCTTTGC-TTGGCTTTCAACAACAATCTCTCTGGTGCTTTGGCACATTATAGTGGT 1571
| || | |||| || |||| ||||| |||||| | |||||||||| | || || ||| |
Sbjct 1512 CTGCAC-TTGCTTTAGCTTACAACACCAATCTTTTTGGTGCTTTGACTCACTACAGTAGC 1570
Query 1572 GGACCGGCTGCTTTATATTACGGAGCTGGG-TATGTAGATCTGAGAGATATGTT-TAGAG 1629
|| | || ||| | || || ||||| ||| ||||| |||||| ||| | || |||
Sbjct 1571 GGTCAAGCCGCTGTCTACTATGGAGC-GGGTTATGTTGATCTGCCTGATGTATTCAAGA- 1628
Query 1630 TCGGGTTCGTGATGGC-TC-TTGTACAAGCGATCATCTGGGGAGGT-GTTGGATCTTTCT 1686
| || ||||||||||| | | || | ||||| || |||||| || |||||| ||||||
Sbjct 1629 TTGGATTCGTGATGGCGACGAT-TA-ATGCGATAATATGGGGA-GTAGTTGGAACTTTCT 1685
Query 1687 GGTGGAAATTTTTGGGTCTCTA 1708
||||||||||||||||||||||
Sbjct 1686 GGTGGAAATTTTTGGGTCTCTA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74161707015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5