BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64290.1
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951257 jgi|Araly1|951257|scaffold_803144.1 2822 0.0
> Ahg951257 jgi|Araly1|951257|scaffold_803144.1
Length=1735
Score = 2822 bits (1528), Expect = 0.0
Identities = 1672/1742 (96%), Gaps = 8/1742 (0%)
Strand=Plus/Plus
Query 92 CTCTCTATATATATAATCTCCGGCGATGGAGAGTTTCGCTCTTCACTCTCTCTCCACCAC 151
|||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTAATCTCCGGCGATGGAGAGTTTCGCTCTTCACTCTCTCTCCACCAC 60
Query 152 CGCCACTTCCACCTTACTCTCCCATCATCATCATCACCATCCCTCACGTCTCTCTCTTCT 211
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CGCCACTTCCACCTTACTCTCCCATCATCATCAT---CATCCCTCACGTCTCTCTCTTCT 117
Query 212 CCGTCGTACCTCTTCGAGAtctccgccttcaacaatctccctccgatctctctccgttca 271
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCGTCGCACCTCCTCGAGATCTCCGCCTTCAACAATCTCCCTCCGATCTCTCTCCGTTCA 177
Query 272 acctctctccttccctcttctcaaaccaattcctcgattctccACACGAATCGCCGCCGC 331
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACCTCTCTCCTTCCCTCTCCTCAAACCAATTCCTCGATTCTCCACACGAATCGCCGCCGC 237
Query 332 ACCGCAAGACAACGctcctcctcctcctcccccatctccgtctccgtctccgtctcctcA 391
|||||||||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 238 ACCGCAAGACAACGCTCCTCCTCCTCCTCCTCC--C-CCATCTCCGTCTCCGTCTCCTCA 294
Query 392 AGGAGCGAAACTCATCCCTCTGATTCTCTCAATCTCCGTCGGCCTAATCCTCCGATTCGC 451
||||||||||||||| ||||| || ||||||||||||||||| || ||||||||||||||
Sbjct 295 AGGAGCGAAACTCATTCCTCTAATCCTCTCAATCTCCGTCGGTCTCATCCTCCGATTCGC 354
Query 452 TGTTCCTGTACCAGAAGGAGTCACACCACAAGGCTGGCAATTACTCTCAATCTTCCTCTC 511
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 355 TGTTCCTGTACCAGAAGGAGTCACGCCACAAGGCTGGCAATTACTCTCCATCTTCCTCTC 414
Query 512 AACAATCGCTGGTCTCGTCCTTAGTCCTCTCCCAGTCGGAGCTTGGGCTTTCATTGGTCT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 AACAATCGCTGGTCTCGTCCTTAGTCCTCTCCCAGTCGGAGCTTGGGCTTTCATTGGCCT 474
Query 572 CACCGCTTCAATCGTCACCAAAACGCTTTCTTTCTCCGCCGCTTTCTCAGCTTTCACAAG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CACCGCTTCAATCGTCACCAAAACGCTTTCTTTCTCCGCCGCTTTCTCAGCTTTCACAAG 534
Query 632 CGAGGTTATCTGGTTGATCGTTATCTCTTTCTTCTTCGCTCGTGGATTCGTCAAAACAGG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CGAGGTTATCTGGTTGATCGTTATCTCTTTCTTCTTCGCTCGTGGATTCGTCAAAACAGG 594
Query 692 TCTTGGTGATAGAATCGCTACTTACTTTGTCAAATGGCTTGGGAAGAGTACTTTAGGTCT 751
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 TCTTGGTGATAGAATCGCTACTTACTTTGTGAAATGGCTTGGGAAGAGTACTTTAGGTCT 654
Query 752 ATCTTATGGTCTCACGCTTAGTGAGGCTTTAATTGCTCCTGCGATGCCTAGTACTACTGC 811
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 655 TTCTTATGGGCTCACGCTTAGTGAGGCTTTGATTGCTCCTGCAATGCCTAGTACCACTGC 714
Query 812 TAGAGCTGGTGGCATTTTCTTGCCCATCATCAAGTCTCTATCGCTCTCGGCTGGAAGTAA 871
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 715 TAGAGCTGGTGGCATTTTCTTGCCCATCATCAAGTCTCTCTCGCTATCTGCTGGAAGTAA 774
Query 872 ACCGAATGATTCTTCTTCGAGGAAACTAGGCTCTTACTTGATTCAATCTCAATTCCAGTG 931
|||| |||||||||||| |||||| |||| ||||||||||| ||||||||||| |||||
Sbjct 775 ACCGGGTGATTCTTCTTCTAGGAAATTAGGGTCTTACTTGATCCAATCTCAATTTCAGTG 834
Query 932 CGCCGGAAACTCTAGTGCGCTTTTCTTGACTGCTGCAGCTCAAAATTTGCTGTGTCTCAA 991
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CGCCGGAAACTCTAGTGCTCTTTTCTTGACTGCTGCAGCTCAAAATTTGCTGTGTCTCAA 894
Query 992 GTTAGCAGAGGAGCTTGGAGTAGTGATCTCAAACCCGTGGGTTTCTTGGTTTAAGGCTGC 1051
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTTAGCTGAGGAGCTTGGAGTAGTGATCTCAAACCCGTGGGTTTCTTGGTTTAAGGCTGC 954
Query 1052 TAGTCTACCTGCAATCATATCACTTCTTTGTACTCCACTTATCCTCTATAAGCTTTATCC 1111
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 955 TAGTCTACCTGCAATCATATCACTTCTTTGTACTCCATTTATCCTCTATAAGCTTTATCC 1014
Query 1112 TCCAGAAAC-AAAGGACACACCTGAGGCTCCAGGTATTGCTGCAACGAAACTCAAGCAAA 1170
||||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1015 TCCAGAAACCAAAG-ACACACCGGATGCTCCAGGTATTGCTGCAACGAAACTCAAGCAAA 1073
Query 1171 TGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTC 1230
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1074 TGGGCCCTGTCACTAAAAACGAATGGATCATGGTCAGTACAATGCTTCTTGCTGTCACTC 1133
Query 1231 TTTGGATCTGCGGAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTTGGATCTGCGGAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCT 1193
Query 1291 CCATACTTCTTGTGCTAGGTGTCCTTAATTGGGACGATTGCCTAAGCGAAAAATCGGCAT 1350
||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1194 CCATACTTCTTCTCCTTGGTGTCCTCAATTGGGACGATTGCCTAAGCGAAAAATCGGCAT 1253
Query 1351 GGGACACATTAGCTTGGTTTGCTGTCTTGGTGGGAATGGCAGGACAGCTTACAAACCTCG 1410
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1254 GGGACACATTAGCATGGTTTGCTGTCTTGGTGGGAATGGCAGGACAGCTCACAAACCTCG 1313
Query 1411 GTGTTGTAACGTGGATGTCTGATTGTGTAGCTAAAGTTCTACAATCTCTCTCCTTGAGTT 1470
|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 1314 GTGTTGTAACATGGATGTCTGATTGTGTAGCCAAAGTTCTCCAATCTCTCTCCTTGGGTT 1373
Query 1471 GGCCTGCTGCGTTTGGACTTCTTCAAGCAGCCTACTTCTTCATTCACTACCTTTTCGCAA 1530
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 GGCCTGCTGCGTTTGGACTTCTTCAAGCAGCGTACTTCTTCATTCACTACCTTTTCGCAA 1433
Query 1531 GCCAAACCGGTCATGTTGGAGCTCTCTTCTCAGCTTTCCTTGCTATGCATATAGCAGCAG 1590
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1434 GCCAAACCGGTCACGTTGGAGCGCTTTTCTCAGCTTTCCTTGCTATGCATATAGCAGCAG 1493
Query 1591 GTGTTCCAGGAATTCTAGCTGCACTTGCTTTAGCATACAACACCAATCTTTTTGGTGCTT 1650
||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1494 GTGTTCCGGGCATTTTAGCTGCACTTGCTTTAGCTTACAACACCAATCTTTTTGGTGCTT 1553
Query 1651 TGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGCGGGTTATGTTGATCTGC 1710
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TGACTCACTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGCGGGTTATGTTGATCTGC 1613
Query 1711 CTGATGTATTCAAGATTGGATTCGTGATGGCGACGATTAATGCGATAATCTGGGGAGTAG 1770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1614 CTGATGTATTCAAGATTGGATTCGTGATGGCGACGATTAATGCGATAATATGGGGAGTAG 1673
Query 1771 TTGGGACTTTCTGGTGGAAATTTTTGGGTCTCTACTAAGAGCTCCTCAGAAGAAAGTTGT 1830
|||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1674 TTGGAACTTTCTGGTGGAAATTTTTGGGTCTCTATTAAGAGCTCCTCGGAAGAAAGTTGT 1733
Query 1831 TC 1832
||
Sbjct 1734 TC 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79951424255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5