BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64300.1
Length=2059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1 2948 0.0
Ahg932206 jgi|Araly1|932206|scaffold_400194.1 377 1e-103
> Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1
Length=1978
Score = 2948 bits (1596), Expect = 0.0
Identities = 1784/1873 (95%), Gaps = 19/1873 (1%)
Strand=Plus/Plus
Query 1 AAATTTTTGATTTTGCGATAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTTTCGATTTTGTGACAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60
Query 61 TTCCATCAATTTATCCTCATCATCTCCTTCCACCATCTCTCTTTCCCGCTCAAGACTAAG 120
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTCCATCAATCTATCCTCATCATCTCCTTCCACCATATCTCTTTCCCGCTCAAGACTAAG 120
Query 121 CCAAAGCTCTACTACATTACTCCATGGACTACATCGTGTTACTTTACCATCTAACCATCC 180
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCGAAGCTCTACTACATTACTCCATGGACTACACCGTGTTACTTTACCATCTAACCATCC 180
Query 181 ATTGTCAACCTTTTCCATTAAAACCAATACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 240
| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 181 A---TCAAAGTTTTCCATTAAAA-C--TACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 234
Query 241 AGAAGATGATCTGCTCTCATTCACCAACGGAAACACTCCTCTCTCAAATGGGTCTCTCAT 300
|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 235 AGAAGATGATCTGCTCTCATTCACCAACGGAAACGCTCCTCTCTCAAATGGTTTTCTCAT 294
Query 301 TGATGATCGGACCGAAGAGCCATTAGAGGCTGATTCGGTTTCACTTGGAACACTTGCTGC 360
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 TGATGATCGGACTGAAGAGCCATTAGAGGCTGATTCAGTTTCACTTGGAACACTTGCTGC 354
Query 361 TGATTCTGCTCCTGCACCAGCCAATGGTTTTGTTGCTGAAGATGATGACTTTGAGTTGGA 420
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 355 AGATTCAGCTCCTGCACCAGCCAATGGTTTTGTTACTGAAGATGATGACTTTGAGTTGGA 414
Query 421 TTTACCAACTCCTGGTTTCTCTTCTATCCCTGAGGCCATTGAAGATATACGCCAAGGAAA 480
||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 415 TTTGCCAACTCCAGGTTTCTCTTCTATCCCTCAGGCCATTGAAGACATACGCCAAGGAAA 474
Query 481 GCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAAATGAAGGGGATTTGGTGATGGCTGC 540
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 475 GCTTGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGCGATTTGGTGATGGCTGC 534
Query 541 TCAGTTAGCAACACCTGAAGCTATGGCTTTTATTGTGAGACATGGAACTGGGATAGTTTG 600
||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 535 TCAATTGGCAACACCTGAAGCTATGGCTTTTATTGTGAAACATGGAACTGGGATAGTTTG 594
Query 601 TGTGAGCATGAAAGAAGATGATCTCGAGAGGTTGCACCTTCCTCTAATGGTGAATCAGAA 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 TGTGAGCATGAAAGAAGATGATCTCGAGAGATTGCACCTTCCTCTAATGGTGAATCAGAA 654
Query 661 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 714
Query 721 AACAACGGGAGTATCAGCTCGTGACAGGGCAACAACCATATTGTCTCTTGCATCAAGAGA 780
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 AACAACAGGAGTATCAGCTCGTGACAGGGCAACAACGATATTGTCTCTTGCATCAAGAGA 774
Query 781 TTCAAAGCCTGAGGATTTCAATCGTCCAGGTCATATCTTCCCACTGAAGTATCGGGAAGG 840
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 775 TTCAAAGCCTGAGGATTTCAACCGTCCAGGTCATATCTTCCCGCTGAAGTATCGGGAAGG 834
Query 841 TGGGGTTCTGAAAAGGGCTGGACACACTGAAGCATCTGTTGATCTCACTGTTTTAGCTGG 900
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 835 CGGGGTTCTGAAAAGGGCTGGCCACACTGAAGCATCTGTTGATCTTACTGTTTTAGCTGG 894
Query 901 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 954
Query 961 ACCAAAACTTCGTGAATTTGCCGCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTT 1020
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 955 ACCAAAACTTCGTGAATTTGCCGCTGAGAATAACCTGAAAATTGTTTCCATCGCAGATTT 1014
Query 1021 GATCAGGTATAGAAGAAAGAGAGATAAATTAGTGGAACGTGCTTCTGCGGCTCGGATCCC 1080
|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1015 GATCAGATATAGAAGAAAGAGAGATAAATTAGTGGAACGTTCTTCTGCTGCTCGGATCCC 1074
Query 1081 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATATTAGACGGAATAGAGCA 1140
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATACTAGACGGAATAGAGCA 1134
Query 1141 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTCGTGAGGGTTCATTC 1200
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1135 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTTGTGAGGGTTCATTC 1194
Query 1201 TGAATGTCTAACAGGGGACATATTTGGGTCTGCAAGGTGTGATTGCGGGAACCAGCTAGC 1260
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1195 TGAATGTCTCACAGGAGACATATTTGGGTCTGCAAGGTGCGATTGCGGGAACCAGCTAGC 1254
Query 1261 ACTCT-CGATGCAGCAGATCGAGGCTACTGGTCGCGGTGTGCTGGTTTACCTACGTGGAC 1319
||| | | ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 ACT-TGCAATGCAGCAGATAGAGGCTACTGGTCGTGGTGTGCTGGTTTACCTACGTGGAC 1313
Query 1320 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTGCAAGATGCTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTACAAGATGCTG 1373
Query 1380 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1433
Query 1440 GAATTGGTGCACAGATAATAAGGGATTTAGGTGTTAGGACAATGAAGCTGATGACAAATA 1499
|||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1434 GAATTGGTGCACAGGTAATAAGGGATTTAGGCGTGAGGACAATGAAGCTGATGACGAATA 1493
Query 1500 ATCCCGCAAAGTATGTTGGTTTGAAGGGATATGGATTAGCCATTGTTGGGAGAGTCCCTC 1559
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1494 ATCCGGCAAAGTATGTTGGTCTGAAGGGATACGGATTAGCCATTGTTGGGAGAGTCCCTC 1553
Query 1560 TATTGAGTCTTATCACGAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1619
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TATTGAGTCTTATCACAAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1613
Query 1620 GTCACATGTATGGCTTGAAGTTCAAAGGGGATGTTGTGGAGAAGATTGAGTCTGAATCTG 1679
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1614 GTCACATGTATGGCTTGAAGTTCAAAGGCGATGTTGTGGAGAAGACTGAGTCTGAATCTG 1673
Query 1680 AGTCCTAAGCTTAAAAACCAGGACGAACCGAATGGAATCAAGAACTATAGATATAATACT 1739
||||||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1674 AGTCCTAAGTTTGAAAACCAGGACGAACCGAATGGAATAAAGAAATATAGGTATAATACT 1733
Query 1740 TCACAAAAAACAAGGAAAGAAATTGACACAGAAGAAGA-G--GAA-AAA--GACATTTGA 1793
| | ||||| || ||||||||||||||||||||||||| | ||| ||| ||| |||||
Sbjct 1734 TGA-AAAAACCA-GGAAAGAAATTGACACAGAAGAAGAAGAAGAAGAAAAAGACTTTTGA 1791
Query 1794 TCTGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTGATTTGAt-tttt 1852
|| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1792 TCCGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTTATCTGATATTTT 1851
Query 1853 ttttA-TT-TTGT 1863
||||| || ||||
Sbjct 1852 TTTTACTTCTTGT 1864
> Ahg932206 jgi|Araly1|932206|scaffold_400194.1
Length=1468
Score = 377 bits (204), Expect = 1e-103
Identities = 620/817 (76%), Gaps = 44/817 (5%)
Strand=Plus/Plus
Query 397 TGAAGATGATGACTTTGAGTTGGATTTACCAACTCCTGG-TTTCTCTTCTATCCCTGAGG 455
||| ||||| || ||||| || ||| ||| ||| ||| ||| | ||||| ||| | |
Sbjct 296 TGAGGATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTT-GCGTCTATTCCTCAAG 354
Query 456 CCATTGAAGATATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAA 515
| ||||| ||||| || | || ||| | || || ||||| |||||||||||||| ||||
Sbjct 355 CTATTGAGGATATTCGACTGGGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAA 414
Query 516 ATGAAGGGGATTTGGTGATGGCTGC-TCAGTTAGCAACACCTGAAGCTATGGCTTTTATT 574
| ||||| |||||| | |||||||| || ||| | |||||||||||||||||||||| ||
Sbjct 415 ACGAAGGAGATTTGATAATGGCTGCATC-GTTGGTAACACCTGAAGCTATGGCTTTTGTT 473
Query 575 GTGAGA-CATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATGATC-TCGAGAGGT 632
|| | | ||||| ||||| || || |||||||||||||||| || || | | |||||||
Sbjct 474 GT-AAAGCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGA-CTTGGAGAGGT 531
Query 633 T-GCACCTTCCTCTAATGGTGAATCAG-AAGGAAAACGAAGAAAAGCT-CTCTACTGCAT 689
| | | |||||| ||||||||| | | |||| ||||| ||||| || | | || || |
Sbjct 532 TAG-AGCTTCCTTTAATGGTGACGC-GAAAGGGTAACGAGGAAAAACTCCAC-ACGGCCT 588
Query 690 TTACAGTGACTGTGGATGC-AAAACATGGTACAACAACGGGAGTATCAGCTCGTGACAGG 748
| || || | ||||| || |||| | || ||| | || || || ||||||||||| |||
Sbjct 589 TCACGGTTTCAGTGGACGCGAAAA-AGGGAACATCCACAGGTGTCTCAGCTCGTGATAGG 647
Query 749 GCAAC-AACCATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGGATTTCAATCGTCC 807
|| | ||| ||||| | |||||||||| ||||||||| ||| | ||||||||||||||
Sbjct 648 GC-GCAAACAATATTAACCCTTGCATCAAAAGATTCAAAACCTCAAGATTTCAATCGTCC 706
Query 808 AGGTCATATCTTCCCACTGAAGTAT-C-GGGAAGGTGGGGTTCTGAAAAGGGCTGGACAC 865
|||||||| || || || || || | | |||||||| ||||| ||||| || || ||
Sbjct 707 TGGTCATATTTTTCCTTTG-AG-ATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCAT 764
Query 866 ACTGAAGCATCTGTTGATC-TCACTGTTTTAGCTGGACTGGATCCTGT-TGGAGTACTT- 922
|| ||||| |||||||| | | ||||| || || || | || || || | | || ||
Sbjct 765 ACAGAAGCCTCTGTTGA-CTTGACTGTGTTGGCCGGTTTAGAACCAGTATCG-GT-TTTA 821
Query 923 TGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACTTCGTGAATTTGCC 982
||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 822 TGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCAAGACTTCGCCAATTCGCT 881
Query 983 GCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTTGATCAGGTATAGAAG-AAAGAG 1041
|||||| || ||||| | |||| ||||| ||||| ||||| || |||| ||| ||
Sbjct 882 AAAGAGAACGACTTGAAAATAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAA-AG 940
Query 1042 AGATAAATTAGTGGAACGTGCTT-CTGCGGCT-CGG--ATCCCAACAATGTGGGGACCTT 1097
||| | | | || || || || |||||| | || || || |||||||||||||| |
Sbjct 941 AGAGAGACTGGTTGA--GT--TTACTGCGGTTGCGCCTATACCGACAATGTGGGGACCAT 996
Query 1098 TCACTGCTTACTGCTATAGGTCCAT-A-TTAGACGGAATAGAGCACATAGCAATGGTTAA 1155
||| || | |||| || ||| || | || || ||| | |||||||| |||||||| ||
Sbjct 997 TCAAAGCACATTGCTTTAAGTC-ATTACTT-GATGGAGTTGAGCACATTGCAATGGTCAA 1054
Query 1156 GGGTGAGATTGGTGACGGTCAAG-ACATTCTCGTGAG 1191
||| || || || || || ||| | |||||||||||
Sbjct 1055 GGGGGAAATCGGAGATGGG-AAGGATATTCTCGTGAG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77437468085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5