BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64310.1
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496633 jgi|Araly1|496633|fgenesh2_kg.8__2449__AT5G64310.1 848 0.0
> Ahg496633 jgi|Araly1|496633|fgenesh2_kg.8__2449__AT5G64310.1
Length=672
Score = 848 bits (459), Expect = 0.0
Identities = 629/705 (89%), Gaps = 36/705 (5%)
Strand=Plus/Plus
Query 2 aacaacaacaacaaagcaaaaacactcccaaaccaaaaaaaGAAGAAGAAGAAGCTAAAT 61
||||||||||||| |||||||||||||||||||| |||| || | ||||||||||||
Sbjct 1 AACAACAACAACAGAGCAAAAACACTCCCAAACC-CTAAAA-AA-CA-AAGAAGCTAAAT 56
Query 62 TCGAATCTCTCTCTTTTTTGAAATATGGCTTTTTCCAAATCTCTAGTGTTTGTTCTTCTC 121
||||||||||||| ||| ||||| |||||||| || |||||||||| |||||||||||||
Sbjct 57 TCGAATCTCTCTC-TTTCTGAAAAATGGCTTTCTCGAAATCTCTAGGGTTTGTTCTTCTC 115
Query 122 GCTGCTCTTTTGATTTCTTCCGCAGTGGCTCAATCTCCGGCTCCAGCTCCATCTAACGTC 181
||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct 116 GCTGCTCTTTTGATTTCTTCCACGGTGGCTCAGTCTCCAGCTCCAGCTCCATCTAACGTC 175
Query 182 GGAGGTAGACGGATCTCACCGGCTCCTTCACCTAAGAAGATGACTGCTCCTGCTCCTGCA 241
||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 176 GGAGGAAGACGGATCTCACCGGCTCCTTCACCTAAGAAGACGACTTCTCCTGCACCTGCA 235
Query 242 CCTGAAGTTTCTCCTTCTCCTTCTCCGGCAGCCGCATTGACTCCAGAATCCTCTGCTTCA 301
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 CCTGAAGTTTCTCCTTCTCCTTCTCCGGTAGCCGCATTGACTCCAGAATCCTCTGCTTCA 295
Query 302 CCACCATCGCCGCCTCTAGCTGATTCTCCTACCGCTGACTCCCCGGCTTTGTCTCCATCT 361
|| |||||||||||||| ||||||||||||||| ||||||| || ||||| ||||| ||
Sbjct 296 CCTCCATCGCCGCCTCTTGCTGATTCTCCTACCTCTGACTCACCTGCTTTATCTCCGTCC 355
Query 362 GCGATCTCCGATTCTCCGACTGAAGCTCCTGGTCCTGCTCAGGGCGGCGCCGTTTCGAAC 421
|| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 356 GCAATCTCCGATTCGCCTACTGAAGCTCCTGGTCCTGCTCAGGGCGCCGCCGTTTCGAAC 415
Query 422 AAATT-CGCCAGT-TTCGGATCTGTGGCGGTTATGTTAACTGCTGCCGTTTTGGTTATCT 479
| || || |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 416 -AGTTACG-CAGTCTTCGGATCTGTGGCGGTTATGTTAACCGCTGCCGTTTTGGTTATCT 473
Query 480 AGGTTGTTCCGATCAATGAAGCTTCtttgattttatttatttattttagatatat-taga 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 474 AGGTTGTTCCGATGAATGAAGCTTCTTTGATTTTATTTATTTATTTTAGATATATAT-GA 532
Query 539 gttttgtgagagagatgatgattcattatttttctcttctttctattattttctttgaat 598
||||||||||||||||||| |||| ||||||||||||||||| |||| | |||| ||||
Sbjct 533 GTTTTGTGAGAGAGATGATCATTCCTTATTTTTCTCTTCTTTTTATT-TCATCTTAGAAT 591
Query 599 atttttctttcttcGGCTGATCCTATGCGCGTTTGTATCTATCCAATATTTATCTATCTA 658
||||||||||||| | | | | | |||||||| |||||||| || |
Sbjct 592 ATTTTTCTTTCTT----T--T--T--G----T----ATCTATCCGATATTTAT--AT--A 629
Query 659 TATGATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 703
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 T--GATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26266689813
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5