BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64341.1
Length=2471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496639 jgi|Araly1|496639|fgenesh2_kg.8__2455__AT5G64342.1 3681 0.0
> Ahg496639 jgi|Araly1|496639|fgenesh2_kg.8__2455__AT5G64342.1
Length=2447
Score = 3681 bits (1993), Expect = 0.0
Identities = 2334/2487 (94%), Gaps = 70/2487 (3%)
Strand=Plus/Plus
Query 1 TCTTTAGAAATATTTCGT-aaaaaaaaaTTCTCCGTTTAGACATTATTGTTCGTTGGTCA 59
|||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 1 TCTTTAGAAATATTTCGTAAAAAAAAAATTCTGCGTTTACACATTATTGCTCGTTGGTCA 60
Query 60 CTTTCATCTCTCTTATCCCTTTGCTTTTCCATTGATTCAGCTCaaaaaaaaacaaaaaaG 119
| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 61 C-TTCATCTCTCTTATCCCTTTGCTTTTCCATTGATTCAGCTC---ATAAACCAAAAAAG 116
Query 120 TCTCATCGTTTTCTCTGGATCTGACCGAAAGATCATTCCTTTCTAAGATACTAAAGTAGG 179
|||||||||| ||||||||||||| ||||||||| ||||||| |||| |||||||||| |
Sbjct 117 TCTCATCGTTCTCTCTGGATCTGAGCGAAAGATCGTTCCTTTGTAAGCTACTAAAGTA-G 175
Query 180 TTTGAGTGATCAGAATCAATTAGAGTGTG--TATAAGAGGAAGAGAAAGAGAAAACAGCA 237
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 176 ATTGA-TGATCAGAATCAATTAGAGTGTGTATATAAGAAGAAGAGAAAGAGAAAACAGCA 234
Query 238 TGTGTATTGCCGTATACCGTAAAGTTTTGAGCTTGAATCTGTATTGCCGTGTGATACTGT 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 235 TGTGTATTGCCGTATACCGTAAAGTTTTGCGCTTGAATCTGTATTGCCGTGTGATTCTGT 294
Query 298 AGATTGTTTCACCTTTGAAGCAACACCTTCAAGAGTCAAATCCT-TT-TCT-TTCTTATT 354
| ||||||||||||||||| |||||||||||||||||||||||| || | | ||||||||
Sbjct 295 AAATTGTTTCACCTTTGAACCAACACCTTCAAGAGTCAAATCCTCTTCTTTGTTCTTATT 354
Query 355 CATCTTCCCTTCTTTTTCGGTATATTATAAACACTTTTGAAAATGGGATCACAACATTTC 414
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 355 CATCTTCCCTTCGTTTTCGATATATTTTAAACACTTTTGAAAATGGGATCACAACATTTT 414
Query 415 TATGTGTACCATTGTGAACAAAGAATCAGCTAGACTAAAAGCTCACTCTCCTTCCACAAA 474
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||
Sbjct 415 TATGTGTACCATTGTGAACAAAGAATCAGCTAGACT-AAAGCTTACTGTCCTTCCAC-AA 472
Query 475 CAAAACTTTCCTCCTTTTGGTTTTGGTATCTGTCTACTTTCTTCAATCAAGATTTCCTCA 534
||||| |||||||| |||| | | || | |||||| |||||
Sbjct 473 CAAAAGTTTCCTCC------TTTT-G-----G---------TT---T-AAGATTCCCTCA 507
Query 535 AAGTTATGGTGTGCCAATCACCTGGTAAGACAAGATTTCGAGGATTGAAGTACGAGACCG 594
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 508 AAGTTATGGTGTGCCAATCACCTGGTAAGACAAGATTTCGAGCATTGAAGTACGAGACAG 567
Query 595 GAAACGCTAACGAATCAACAATTGTAGTGAGAGTTATTGAATGCTATCAACCGATGGATA 654
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GAAACGCTAACAAATCAACAATTGTAGTGAGAGTTATTGAATGCTATCAACCGATGGATA 627
Query 655 ATTGCCAGGCTGAGTACTTCAGACTTCTACTCAAACCAGTCACGTAGTTGGTTGGTGACA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 628 ATTGCCAGGCTGAGTACTTCAGACTTCTACTCAAACCAGTCACGTAGTTGGTTGGTGATA 687
Query 715 TTTCGCTGCATTTTTCAATCTGTGATTGTTTTTCGTTCGTCTTTCTTTTACTATTTTCTC 774
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 688 TTTCGCTGCATTTTTCGATCTGGGATT-TTTTTCGTTCGTCTTTCTTTTACTATTTTCTC 746
Query 775 GAAAAGGACACAAGAAGTATTGCATTCACTCAGTTGAGCAACTTAACAATCGTGTTGTAC 834
|||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 747 AAAAAGGGCACAAGAAGTATTGCATTCACTCAATAGAGCAACTTAACAATCGTGTTGTAC 806
Query 835 TTTTTGAAGTTCCCTTGAGCTAAACTGCTAAGAGCATGCCTCTGGATAAGAGGCAACGGG 894
||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 807 TTTTTAAAGCTCCCTTGAGCTAAACTGCTAAGAGCATGCCTCTAGATACGAGGCAACGGG 866
Query 895 ATTTGCCTCTGGGCTTAAGTCCTCAAGCTTGCTTCAAGGATATAGTAGGTCGGTCTGTCC 954
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 867 ATTTGCCTCTGGGCTTAAGTCCTCAAACTTGCTTCGAGGATATAGCAGGTCGGTCTGTCC 926
Query 955 TTCCTAGAATTCCTCTCCCTGAGCTTGGGAAACTATATGCAGCTAAGCTTCAGGCTCGCT 1014
|||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 927 ATCCTGGAATCCCTCTCCCTGAGCTTGGGAAACTATTTGCAGCTAAGCTTCAGGCTCGCT 986
Query 1015 GTTTGCAGCCACCACCATTCCAGTCTTTGCTGTGCAGTCATGATAAGGAGTCTTATGGAA 1074
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 987 GTTTGCAGCCACCACCATTCCTTTCTTTGCTGTGCAGCCATGATAAGGAGTCTTATGGAA 1046
Query 1075 AAAGATTCTCACGGTCTGACATGCGGTCTTGGT--GC-GCTGCTG---ctactactacta 1128
|| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 1047 AACGATTCTCACGGTCTGACATGCGGTCTTGGTGCGCTGCTGCTGCTACTACTACTACTA 1106
Query 1129 ctactCCACTTGGAGCATTAGAGTCTTCTCAGAAAAGACTTTTGATATTCGATCAGTCAG 1188
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CTACTCCACATGGAGCACTAGAGTCTTCTCAGAAAAGACTTTTGATATTCGATCAGTCAG 1166
Query 1189 GAGACCAGACTCGTCTATTACAATGTCCATTTCCTCTACGGTTTCCATCTCATGCGGCTG 1248
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1167 GAAACCAGACTCGTCTATTACAATGTCCATTTCCTCTACGGTTTCCATCTCATGCGGCGG 1226
Query 1249 CAGAACCAGTGAAACTCTCTGAGTTACAAGGTATAGAGAAAGCTTTCAAAGAAGATGGTG 1308
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1227 CAGAACCAGTGAAACTCTCTGAGTTACAAGGTATAGAGAAAGCTTTCAAGGAAGATGGTG 1286
Query 1309 AAGAGTTTCACAAG----A-GT-GATGGAACAGAGTCAGAAATGCATGAAGACACTGAGG 1362
|||||||| ||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 1287 AAGAGTTTGACAAGAACCATTTAGATGGAACAGAGTCAGAAATGCATGAAGACACTGAGG 1346
Query 1363 AGATCAATGCATTGCTATATTCAgatgatg---at--t-atgatgatgattgcgagagtg 1416
|||||||||||||||| ||||||||||||| || | ||||||||||||| |||||||
Sbjct 1347 AGATCAATGCATTGCTGTATTCAGATGATGATTATGATGATGATGATGATTGTGAGAGTG 1406
Query 1417 atgatgaAGTAATGAGCACTGGTCACTCTCCTTATCCAAATGAAGGAGTTTGCAACAAAA 1476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1407 ATGATGAAGTAATGAGCACTGGTCACTCTCCTTATCCAAATGAACGAGTTTGCAACAAAA 1466
Query 1477 GGGAATTAGAAGAAATCGATGGTCCTTGTAAAAGGCAGAAACTACTGGATAAGGTCAACA 1536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1467 GGGAATTAGAAGAAATCGATGGTCTTTGTAAAAGGCAGAAACTACTGGATAAGGTCAACA 1526
Query 1537 ACATCAGCGACTTATCATCACTTGTGGGCACTGA-GAGCTCCACACAACTCAATGGATCT 1595
||| |||| ||| ||||||||||||||||||| | ||| |||||| |||||||||||||
Sbjct 1527 ACAGCAGCAACTCATCATCACTTGTGGGCACT-ACGAGTTCCACAAAACTCAATGGATCG 1585
Query 1596 TCCTTTCTTAAGGACAAAAAGCTCCCTGAATCAAAAACCATATCGACCAAAGAGGACACT 1655
||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 1586 TCCTTTCTTAAGGACAAAAAGCTCCCTGAATCAAAAAACATCTGGACCAAAGAAGACACT 1645
Query 1656 GGTTCTGGTCTGAGCAACGAGCAGTCGAAGAAAGACAAGATCCGCACAGCTCTGAAAATA 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 GGTTCTGGTCTGAGCAACGAGCAGTCGAAGAAAGACAAGATCCGCACAGCTCTGAAAATA 1705
Query 1716 CTCGAGAGCGTAGTCCCTGGTGCAAAAGGAAACGAAGCGCTCTTACTTCTGGACGAAGCA 1775
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 CTCGAGAGCATAGTCCCCGGTGCAAAAGGAAACGAAGCGCTCTTACTTCTGGACGAAGCA 1765
Query 1776 ATTGATTACCTAAAGTTGCTGAAACGAGACTTAATCTCCACAGAGGTTAAGAACCAAAGC 1835
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 ATTGATTACCTAAAGTTACTGAAACGAGACTTAATCTCCACAGAGGTTAAGAACCAAAGC 1825
Query 1836 TCCACCACTCACAAGTCACCAATCTTGTTGCTTAAAGAGACAACATGGGGAACAAGAAAT 1895
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1826 TCCACCACTCACAAGTCACCAATCTTGTTGGTTAAAGAGACAACATGGGGAACAAGAAAT 1885
Query 1896 CTGCAGACAGATAAGGCGTGAAAGATTCTGACGAGTTAAAACGTGTGAAGTGGGTTTTTG 1955
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1886 CTGCAGACAGATAAGGCATGAAAGATTCTCACGAGTTAAAACGTGTGAAGTGGGTTTTTG 1945
Query 1956 GGTACGTATCCTCTGCACCAGCTTTTTAGCTGTATATAGTGGACTACTTTTAAGTAT-TA 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1946 GGTACGTATCCTCTGCACCAGCTTTTTAGCTGTATATAGTGGACTACTTTTAAGTATATA 2005
Query 2015 T-ATATGCTACTGCAAATTTCAAAAAGTTAAAGAAGAAAAGAGGTCACTTTCTTCTTCTC 2073
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 TAATATGCTACTGC-AATTTCAAAAAGTTAAAGAAGAAAAGAGGTCACTTTCTTCTTCTC 2064
Query 2074 TCTGTGTGGAATGAAAAGCCAAAGTCGTCATGGTCATTGATGGACAATGATTATCTTTTT 2133
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2065 TCTGTGTGGAAAGAAAAGCCAAAGTCGTCATGGTCATTGATCGACAATGATTATCTTTTT 2124
Query 2134 TGGCTGAGTGTGGATGGTGAAATCAAAAGGCAAATATTCAAAGTCTCAT-CTCAAGCTCG 2192
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2125 TGGCTGAGTGTGGATGGTGAAATCAAAAGGC-AATATTCAAAGTCTCATCCTCAAGCTCG 2183
Query 2193 CGTGATCTATGAATCTCCCCTAAGGTAATAAAATATCTCTGACCCACACACACTCTTTTG 2252
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2184 CGTGGTCTATGAATCTCCCCTAAGGTAATAAAATGTCTCTGACCCACACACACTCTTTTG 2243
Query 2253 TCCATATGATGACTAGATGGGTCCATGATTTTTATGAAATATTGATGTCATGTTCATGTA 2312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 TCCATATGATGACTAGATGGGTCCATGATTTTTATGAAATATTGATGTCATGTTCATGTA 2303
Query 2313 ATTAATTTGAGTGTCTGTAATAATGCAAACTATTCCTTTGTCTTTTGCTTC-AACCCACA 2371
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2304 ATTAATTTGAGTGTCTGTAATAATGCAAACTATTCCTTTGTCTTTTGCTTCCAACCCACA 2363
Query 2372 TGCTACTGGTATTGTTGTGTCTCTATTG-TTGTATTGTTAAATGGTTTTGTAATAAACAA 2430
|||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2364 TGCTACTGGTTTTGTTGTGTCTCG-TTGGTTGTATTGTTAAATGGTTTTGTAATAAACAA 2422
Query 2431 ATGGCGTTTTTTGGTTTGTGATAAAAA 2457
|||| |||||| |||||||||||||||
Sbjct 2423 ATGG-GTTTTT-GGTTTGTGATAAAAA 2447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93130649025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5