BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64350.1

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496641 jgi|Araly1|496641|fgenesh2_kg.8__2457__AT5G64350.1         802    0.0  


> Ahg496641 jgi|Araly1|496641|fgenesh2_kg.8__2457__AT5G64350.1
Length=533

 Score =  802 bits (434),  Expect = 0.0
 Identities = 505/538 (94%), Gaps = 9/538 (2%)
 Strand=Plus/Plus

Query  60   gagacagagagaagatat--agagaTGGGTGTGGAGAAGCAAGTCATCAGACCCGGCAAC  117
            |||| |||||||||||||  ||||||||||||||||||| |||||||||||||||||| |
Sbjct  1    GAGAGAGAGAGAAGATATAGAGAGATGGGTGTGGAGAAGGAAGTCATCAGACCCGGCACC  60

Query  118  GGTCCCAAACCCGCTCCGGGCCAAACCGTCACCGTCCATTGCACCGGATTCGGGAAAGAT  177
            ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  61   GGTCCTAAACCCGCTCCGGGTCAAACCGTCACCGTCCATTGCACCGGATTCGGGAAAGGT  120

Query  178  GGTGATCTATCCCAGAAGTTCTGGAGTACAAAGGACGAGGGACAAAAACCTTTCTCGTTC  237
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  GGTGATCTGTCCCAGAAGTTCTGGAGTACAAAGGACGAGGGGCAAAAACCTTTCTCGTTC  180

Query  238  CAAATCGGTAAAGGTGCTGTGATCAAAGGATGGGATGAAGGCGTTATCGGAATGCAAATT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CAAATCGGTAAAGGTGCTGTGATCAAAGGATGGGATGAAGGCGTTATCGGAATGCAAATT  240

Query  298  GGAGAGGTTGCTCGCTTGCGGTGCTCATCGGATTACGCATATGGCGCTGGTGGATTTCCG  357
            ||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct  241  GGAGAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCTTACGGCGCTGGTGGATTTCCG  300

Query  358  GCATGGGGGATCCAGCCAAACTCTGTTCTCGACTTTGAAATCGAAGTACTGAGCGTGCAG  417
            | |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  301  GGATGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAGATCGAAGTACTGAGCGTGCAG  360

Query  418  TAATGATCTCCCCAGCTCCTAAACTGTGGGTAGATTATTAAACAACCCTTTATGTTTATT  477
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| 
Sbjct  361  TAATGATCTCCCCAGCTCCTAAACTGTGGGAAGATTATTAATCAACCCTTTATCTTTATC  420

Query  478  GCTTCTGGGATCTTTATGCAACAAAACTTTGTGATGTCATTGCTCTTCTAAAA--CTCTT  535
            |||||||||||||| ||| ||||||||||||||||||||||||||||||||||  |||||
Sbjct  421  GCTTCTGGGATCTTGATGAAACAAAACTTTGTGATGTCATTGCTCTTCTAAAAAACTCTT  480

Query  536  GGACAACGTTTTTATCTAAATAAAAGAAAAGACCCGTCTCGTGTTTCAGTTGGAATGT  593
            |||| ||||||||||||||||||||||     |||||||||||||||||||  |||||
Sbjct  481  GGACCACGTTTTTATCTAAATAAAAGA-----CCCGTCTCGTGTTTCAGTTCCAATGT  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23140610619


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5