BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64360.3
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 1291 0.0
Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 340 1e-92
> Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1
Length=1587
Score = 1291 bits (699), Expect = 0.0
Identities = 850/918 (93%), Gaps = 30/918 (3%)
Strand=Plus/Plus
Query 20 ACGGGGAGAGAGGAAAAACGAAAGGGAACAAAAAGAAATAGGGGATATGGTAGGCGGACG 79
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1 ACGGGGAGAGAGGAAAAACGAAGGGGAACAAAAAAAAAAAGGGGATATGGTAGGCGGACG 60
Query 80 CGGCGGAGTTGGCGGTGGTGGTGGTAACAGAGTGGAGGCGGATCAGTGGCTTGTAACATC 139
||||||||||||| ||| |||||||||||| ||||||||||| ||||||||| |||||
Sbjct 61 CGGCGGAGTTGGC---GGTAGTGGTAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATC 117
Query 140 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 177
Query 200 CGAAGCTGACCCGACCCGAGCAGAAGCTGCAGACTACATCCTCGCAATCTGCGACATTCT 259
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 178 CGAAGCTGACCCGACCCGAGCAGAGGCAGCGGACTACATCCTCGCAATCTGCGACATTCT 237
Query 260 TCTCGCCGGAGAGACTCGTTTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCG 319
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 TCTCGCCGGAGAGACTCGTCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCG 297
Query 320 ACTCGGTCGTTTAGCTCAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 379
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTCGGTCGTTTAGCACAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 357
Query 380 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTC 439
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTC 417
Query 440 CGATGCTTGGTTCGTTCTCTCTGATCCGTTCAAGAAATCATTCTACGACCGAGAATTGCA 499
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 418 CGATGCTTGGTTCGTTCTCTCTGATCCGTCCAAGAAGTCATTCTACGACCGAGAATTGCA 477
Query 500 ACTTAGTCAACTCGGTCAATCTGGATTCCATCCTCAAACCCAATCGCATCAAAATTTCCA 559
||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 478 ACTGAGTCAACTCGGTCAATCTGGTTTCCATCCCCAAACCCAATCGAATCAAAATTTCCA 537
Query 560 GTGGGAACCTAGCAGTAGCACCGCCGTATATCCGCCACCGCGGTCTCAGAGCCAGGCTGG 619
|||| || | | ||||||||||| |||||||| || || |||
Sbjct 538 GTGG-AATC---C-----CACCGCCGTATTTCCGCCAC---------AG-GC-----TGG 573
Query 620 GACCTCGGCGGATCCTATGGCGACGAGCTTCTGGACCGCTTGCCCTTACTGCTTTGTACT 679
||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 574 GACCTCGACGGATCCTATGGCGACGAGCTTCTGGACTGCTTGCCCTTACTGTTTTGTTCT 633
Query 680 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 693
Query 740 GTTTCAAGCTGTGACGATACCAAAACCTCCGGTGGATAA-G--AAAGACGACGAAGACGT 796
|||||||||||||||||||||||||||||| || || | | |||||||||||||||||
Sbjct 694 GTTTCAAGCTGTGACGATACCAAAACCTCCAGTAGACGACGGGAAAGACGACGAAGACGT 753
Query 797 TTACTTTTGCTCATGGGCTTTGTTTCCATTGGGGTTTTCCGGTGAATTTCAAGCTCCAAG 856
|||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||
Sbjct 754 TTACTTTTGCTCATGGGCTTTGTTTCCATTAGGGTTTTCCGGTGAATTTAAAACCCCAAG 813
Query 857 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGTTGGATGGTGAACCAAA 916
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 814 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGGTGGATGATGAAACAAG 873
Query 917 GAAGAGAAAGGAACCGGG 934
||||||||||||||||||
Sbjct 874 GAAGAGAAAGGAACCGGG 891
Score = 595 bits (322), Expect = 3e-169
Identities = 391/422 (93%), Gaps = 14/422 (3%)
Strand=Plus/Plus
Query 1059 GGGAAAGAAACATATGTGAGAAGTAACAAGAAACATGGAGTTGAAGA-AGTCCAAAATGT 1117
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 890 GGGAAAGAAACATCTGTGAGAAGTAACAAGAAACATGGAGTTG-AGACAGTCCAAAATGT 948
Query 1118 AGAAAGTATCAGTAGTGCTAGCAATCACGCGGTTTCAATTGCTTCAAATGCTGCGGCTGT 1177
|||||||||||||||||||||||||||||| | | | ||| ||||| || ||
Sbjct 949 AGAAAGTATCAGTAGTGCTAGCAATCACGC-G---C---T--TTCGGATGCT---GCAGT 996
Query 1178 TGGGTCTTCAACTGGGGTTATGTCTAAACCAGGGAGTTATATTACTAGAAAACGAATGGG 1237
||| || ||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 997 TGGTTCCTCATCCGGGGTTATGTCTAAACCAGGGAGTTATGTTACTAGAAAACGAATGGG 1056
Query 1238 AACAGGCGCTAAGAACCTGGGGAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1297
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1057 AACAGGAGCTAAGAACCTAGGCAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1116
Query 1298 AGAGCCTGGTGTGGCAGGTGGGGGAAATGCAGGCAATGGGATCGGAAGTAACAGGGAGGT 1357
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1117 AGAGCCTGGTGTTGCAGGTGGGAGAAATGAAGGCAATGGGATCGGAAGTAACAGGGAGGT 1176
Query 1358 AGATAATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AGATCATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1236
Query 1418 CATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 TATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1296
Query 1478 CT 1479
||
Sbjct 1297 CT 1298
> Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1
Length=863
Score = 340 bits (184), Expect = 1e-92
Identities = 347/424 (82%), Gaps = 18/424 (4%)
Strand=Plus/Plus
Query 104 TAACAGAGTGGAGGCGGATCAGTGGCTTG-TAACATCGGAGAAGCTTC-TAGCGTCTAGT 161
|||||||| |||||||||||||||||||| | ||||||||||||| || | || || |||
Sbjct 24 TAACAGAGCGGAGGCGGATCAGTGGCTTGCT-ACATCGGAGAAGC-TCTTGGCCTCAAGT 81
Query 162 GATC-TTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGACCCGAGC 220
|| | |||| ||||| ||||||||||||||||| |||||||||||||||||| | ||| |
Sbjct 82 GA-CTTTCATGGAGCTAAGACATTTGCGATCCGTGCATGCGAAGCTGACCCGTCTCGAAC 140
Query 221 AGAAGCTGCAGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-CGT 278
||| || || ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| |
Sbjct 141 AGACGCAGCGGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTAC-C 198
Query 279 TTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCTCAA 338
| || ||||| || | ||||||||||||| || || |||||| | || || ||| |
Sbjct 199 ATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTTCGACTCAGCCGCCTAACTCGA 258
Query 339 AACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT- 397
||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 259 AACCCCGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAATC-T-CAATG 316
Query 398 T-AATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTCCGATGCTTGGTTCGTTC 456
| |||||||| || |||||||||| ||| ||||| | ||||||||||||||||| || |
Sbjct 317 TCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGTCTCCGATGCTTGGTTAGTCC 376
Query 457 TCTCTGATCCGTTCAAG-AAATCATTCTACGACCGAGAATTGCAA-CTTAGTCAACTCGG 514
|||||||||| | |||| |||||| | || || ||||| || || || |||||| | ||
Sbjct 377 TCTCTGATCC-TCCAAGGAAATCAATGTATGATCGAGAGTTT-AAGCTGAGTCAATTTGG 434
Query 515 TCAA 518
||||
Sbjct 435 TCAA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5