BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64360.3 Length=1597 Score E Sequences producing significant alignments: (Bits) Value Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 1291 0.0 Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 340 1e-92 > Ahg496643 jgi|Araly1|496643|fgenesh2_kg.8__2459__AT5G64360.1 Length=1587 Score = 1291 bits (699), Expect = 0.0 Identities = 850/918 (93%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 20 ACGGGGAGAGAGGAAAAACGAAAGGGAACAAAAAGAAATAGGGGATATGGTAGGCGGACG 79 |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 1 ACGGGGAGAGAGGAAAAACGAAGGGGAACAAAAAAAAAAAGGGGATATGGTAGGCGGACG 60 Query 80 CGGCGGAGTTGGCGGTGGTGGTGGTAACAGAGTGGAGGCGGATCAGTGGCTTGTAACATC 139 ||||||||||||| ||| |||||||||||| ||||||||||| ||||||||| ||||| Sbjct 61 CGGCGGAGTTGGC---GGTAGTGGTAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATC 117 Query 140 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 177 Query 200 CGAAGCTGACCCGACCCGAGCAGAAGCTGCAGACTACATCCTCGCAATCTGCGACATTCT 259 |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 178 CGAAGCTGACCCGACCCGAGCAGAGGCAGCGGACTACATCCTCGCAATCTGCGACATTCT 237 Query 260 TCTCGCCGGAGAGACTCGTTTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCG 319 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 238 TCTCGCCGGAGAGACTCGTCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCG 297 Query 320 ACTCGGTCGTTTAGCTCAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 379 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ACTCGGTCGTTTAGCACAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 357 Query 380 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTC 439 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 358 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTC 417 Query 440 CGATGCTTGGTTCGTTCTCTCTGATCCGTTCAAGAAATCATTCTACGACCGAGAATTGCA 499 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 418 CGATGCTTGGTTCGTTCTCTCTGATCCGTCCAAGAAGTCATTCTACGACCGAGAATTGCA 477 Query 500 ACTTAGTCAACTCGGTCAATCTGGATTCCATCCTCAAACCCAATCGCATCAAAATTTCCA 559 ||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 478 ACTGAGTCAACTCGGTCAATCTGGTTTCCATCCCCAAACCCAATCGAATCAAAATTTCCA 537 Query 560 GTGGGAACCTAGCAGTAGCACCGCCGTATATCCGCCACCGCGGTCTCAGAGCCAGGCTGG 619 |||| || | | ||||||||||| |||||||| || || ||| Sbjct 538 GTGG-AATC---C-----CACCGCCGTATTTCCGCCAC---------AG-GC-----TGG 573 Query 620 GACCTCGGCGGATCCTATGGCGACGAGCTTCTGGACCGCTTGCCCTTACTGCTTTGTACT 679 ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 574 GACCTCGACGGATCCTATGGCGACGAGCTTCTGGACTGCTTGCCCTTACTGTTTTGTTCT 633 Query 680 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 634 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 693 Query 740 GTTTCAAGCTGTGACGATACCAAAACCTCCGGTGGATAA-G--AAAGACGACGAAGACGT 796 |||||||||||||||||||||||||||||| || || | | ||||||||||||||||| Sbjct 694 GTTTCAAGCTGTGACGATACCAAAACCTCCAGTAGACGACGGGAAAGACGACGAAGACGT 753 Query 797 TTACTTTTGCTCATGGGCTTTGTTTCCATTGGGGTTTTCCGGTGAATTTCAAGCTCCAAG 856 |||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||| Sbjct 754 TTACTTTTGCTCATGGGCTTTGTTTCCATTAGGGTTTTCCGGTGAATTTAAAACCCCAAG 813 Query 857 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGTTGGATGGTGAACCAAA 916 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| Sbjct 814 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGGTGGATGATGAAACAAG 873 Query 917 GAAGAGAAAGGAACCGGG 934 |||||||||||||||||| Sbjct 874 GAAGAGAAAGGAACCGGG 891 Score = 595 bits (322), Expect = 3e-169 Identities = 391/422 (93%), Gaps = 14/422 (3%) Strand=Plus/Plus Query 1059 GGGAAAGAAACATATGTGAGAAGTAACAAGAAACATGGAGTTGAAGA-AGTCCAAAATGT 1117 ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 890 GGGAAAGAAACATCTGTGAGAAGTAACAAGAAACATGGAGTTG-AGACAGTCCAAAATGT 948 Query 1118 AGAAAGTATCAGTAGTGCTAGCAATCACGCGGTTTCAATTGCTTCAAATGCTGCGGCTGT 1177 |||||||||||||||||||||||||||||| | | | ||| ||||| || || Sbjct 949 AGAAAGTATCAGTAGTGCTAGCAATCACGC-G---C---T--TTCGGATGCT---GCAGT 996 Query 1178 TGGGTCTTCAACTGGGGTTATGTCTAAACCAGGGAGTTATATTACTAGAAAACGAATGGG 1237 ||| || ||| | ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 997 TGGTTCCTCATCCGGGGTTATGTCTAAACCAGGGAGTTATGTTACTAGAAAACGAATGGG 1056 Query 1238 AACAGGCGCTAAGAACCTGGGGAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1297 |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1057 AACAGGAGCTAAGAACCTAGGCAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1116 Query 1298 AGAGCCTGGTGTGGCAGGTGGGGGAAATGCAGGCAATGGGATCGGAAGTAACAGGGAGGT 1357 |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1117 AGAGCCTGGTGTTGCAGGTGGGAGAAATGAAGGCAATGGGATCGGAAGTAACAGGGAGGT 1176 Query 1358 AGATAATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1417 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 AGATCATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1236 Query 1418 CATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 TATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1296 Query 1478 CT 1479 || Sbjct 1297 CT 1298 > Ahg487771 jgi|Araly1|487771|fgenesh2_kg.6__905__AT5G09540.1 Length=863 Score = 340 bits (184), Expect = 1e-92 Identities = 347/424 (82%), Gaps = 18/424 (4%) Strand=Plus/Plus Query 104 TAACAGAGTGGAGGCGGATCAGTGGCTTG-TAACATCGGAGAAGCTTC-TAGCGTCTAGT 161 |||||||| |||||||||||||||||||| | ||||||||||||| || | || || ||| Sbjct 24 TAACAGAGCGGAGGCGGATCAGTGGCTTGCT-ACATCGGAGAAGC-TCTTGGCCTCAAGT 81 Query 162 GATC-TTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGACCCGAGC 220 || | |||| ||||| ||||||||||||||||| |||||||||||||||||| | ||| | Sbjct 82 GA-CTTTCATGGAGCTAAGACATTTGCGATCCGTGCATGCGAAGCTGACCCGTCTCGAAC 140 Query 221 AGAAGCTGCAGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-CGT 278 ||| || || ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| | Sbjct 141 AGACGCAGCGGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTAC-C 198 Query 279 TTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCTCAA 338 | || ||||| || | ||||||||||||| || || |||||| | || || ||| | Sbjct 199 ATCGGAGATTCGAAAGTAACAGACTGGTACGCGGTACTTCGACTCAGCCGCCTAACTCGA 258 Query 339 AACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT- 397 ||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | | Sbjct 259 AACCCCGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAATC-T-CAATG 316 Query 398 T-AATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTCCGATGCTTGGTTCGTTC 456 | |||||||| || |||||||||| ||| ||||| | ||||||||||||||||| || | Sbjct 317 TCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAGCTAGTCTCCGATGCTTGGTTAGTCC 376 Query 457 TCTCTGATCCGTTCAAG-AAATCATTCTACGACCGAGAATTGCAA-CTTAGTCAACTCGG 514 |||||||||| | |||| |||||| | || || ||||| || || || |||||| | || Sbjct 377 TCTCTGATCC-TCCAAGGAAATCAATGTATGATCGAGAGTTT-AAGCTGAGTCAATTTGG 434 Query 515 TCAA 518 |||| Sbjct 435 TCAA 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839774895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5