BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64370.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496645 jgi|Araly1|496645|fgenesh2_kg.8__2461__AT5G64370.1 2082 0.0
> Ahg496645 jgi|Araly1|496645|fgenesh2_kg.8__2461__AT5G64370.1
Length=1453
Score = 2082 bits (1127), Expect = 0.0
Identities = 1307/1392 (94%), Gaps = 20/1392 (1%)
Strand=Plus/Plus
Query 6 AATTGACCAAACCGATCGATCACTGTTGTCATAAAAGTCATCGCCATCTTGGTTTCGTGA 65
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2 AATTGATCAAACCGATCGATCATTGTTGTCATAAAAGTCATCGCCATCTTGGTTTCGTGA 61
Query 66 TC-GAAAAAGACTCGTGAAAAAATGGATCATATGATATCAGAAAACGGAGAAACAAG-TG 123
|| ||| |||||||| |||||||||| | || || |||||||||||||| || || ||
Sbjct 62 TCGGAACCTGACTCGTGGAAAAATGGATAAGATCATCTCAGAAAACGGAGACAC-AGCTG 120
Query 124 CCGAAGGATCGATTTGCGGCTATGATTCGCTGCATCAACTCTTATCAGCGAATCTTAAGC 183
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 121 CCGAGGGATCGATTTGCGGCTATGATTCGCTACATCAACTCTTATCAGCGAATCTCAAGC 180
Query 184 CCGAGCTCTATCAGGAGGTAAACCGGTTGCTCCTTGGACGTAACTGTGGGAGATCGCTTG 243
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CCGAGCTTTATCAGGAGGTAAACCGATTGCTCCTTGGACGTAACTGTGGGAGATCGCTTG 240
Query 244 AACAGATTGTTCTGCCGGAGTCTGCTAA-AGCCTTGTCTTCAAAACATGATTTTGATCTC 302
||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 241 AACAGATTGTTCTTCCGGAGTCTGC-AATATCCTTGTCTTCAAAACATGATTTTGATCTC 299
Query 303 CAGGCTGCT-AGCTTTTCAGCTGATAAAGAGCAAATGAGAAATCCTCGAGTGGTCAGAGT 361
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CAGGCTG-TGAGCTTTTCAGCTGATAAAGAGCAAATGAGAAATCCTCGAGTGGTTAGAGT 358
Query 362 TGGTCTCATTCAAAACTCCATTGCTCTTCCAACCACTGCTCCATTCTCGGACCAAACAAG 421
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 359 TGGTCTCATTCAAAACTCCATCGCTCTTCCGACCACTGCTCCTTTCTCGGACCAAACAAA 418
Query 422 AGGAATATTCGACAAGTTGAAGCCGATAATCGATGCTGCGGGTGTTGCTGGTGTTAACAT 481
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 419 AGGAATATTCGACAAGTTGAAGCCGATGATCGACGCTGCGGGGGTTGCTGGTGTTAACAT 478
Query 482 ACTGTGCTTGCAGGAAGCTTGGACCATGCCATTTGCATTTTGCACTAGGGAGAGGAGATG 541
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 479 ACTGTGCTTGCAGGAAGCTTGGACCATGCCGTTTGCATTTTGCACGAGGGAGAGGAGATG 538
Query 542 GTGTGAGTTTGCAGAGCCTGTTGATGGCGAATCGACAAAGTTTCTTCAAGAACTCGCTAA 601
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 539 GTGTGAGTTTGCAGAGCCTGTTGATGGCGAATCCACAAAGTTTCTTCAAGAACTTGCTAA 598
Query 602 AAAGTATAACATGGTGATTGTTAGTCCTATTCTCGAAAGAGATATTGATCACGGTGAAGT 661
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 AAAGTATAACATGGTGATTGTTAGTCCTATTCTTGAAAGAGATATTGATCACGGTGAAGT 658
Query 662 GCTTTGGAATACCGCTGTGATTATAGGGAATAATGGAAATATCATTGGCAAGCATCGAAA 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 GCTTTGGAATACCGCTGTGATTATAGGGAATAATGGAAATATCATTGGCAAGCACCGAAA 718
Query 722 GAACCATATACCTAGGGTAGGAGATTTCAACGAGAGCACCTATTACATGGAAGGAGACAC 781
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 719 GAACCATATACCGAGGGTTGGAGATTTCAACGAGAGTACGTATTACATGGAAGGAGACAC 778
Query 782 AGGCCATCCTGTGTTTGAGACGGTGTTTGGGAAAATTGCGGTTAATATATGTTATGGCAG 841
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 779 AGGCCATCCTGTTTTTGAGACGGTGTTTGGGAAAATTGCGGTTAATATCTGTTATGGAAG 838
Query 842 ACACCATCCTCTGAATTGGTTAGCTTTTGGTCTAAATGGTGCAGAGATTGTCTTCAACCC 901
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACACCATCCTCTAAATTGGTTAGCTTTTGGTCTAAATGGTGCAGAGATTGTCTTCAACCC 898
Query 902 TTCAGCAACTGTTGGTGAACTCAGTGAACCAATGTGGCCTATTGAGGCACGAAATGCCGC 961
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTCAGCAACTGTTGGTGGACTCAGTGAACCAATGTGGCCTATTGAGGCACGAAATGCCGC 958
Query 962 AATAGCAAACAGTTACTTTGTTGGATCCATTAACCGAGTTGGAACCGAAGTATTCCCCAA 1021
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct 959 GATAGCAAACAGTTACTTCGTGGGATCCATTAACCGAGTTGGAACTGAAGTATTCCCTAA 1018
Query 1022 TCCTTTTACGTCAGGTGATGGAAAACCGCAACACAATGATTTCGGGCATTTCTATGGGTC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCTTTTACGTCAGGTGATGGAAAACCGCAACACAATGATTTCGGGCATTTCTATGGGTC 1078
Query 1082 AAGCCATTTTTCTGCACCAGATGCTTCTTGCACACCGTCTTTGTCCCGTTACAAAGATGG 1141
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 AAGCCATTTCTCTGCACCGGATGCTTCTTGCACACTGTCTTTGTCCCGTTACAAAGATGG 1138
Query 1142 TTTATTGATCTCGGACATGGATCTCAATCTCTGCCGGCAATACAAGGACAAGTGGGGATT 1201
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 1139 GTTATTGATCTCGGACATGGACCTCAATCTCTGTCGGCAATACAAGGACAAATGGGGATT 1198
Query 1202 TAGAATGACTGCAAGATACGAAGTCTATGCCGATCTTTTGGCAAAGTACATAAAGCCAGA 1261
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1199 TAGAATGACTGCAAGATACGAAGTCTATGCCGATCTGTTGGCTAAGTACATAAAGCCAGA 1258
Query 1262 CTTCAAGCCTCAAGTCGTCTCTGACCCATTGCTCCACAAGAATTCTACATAAGAAGAAAA 1321
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1259 CTTCAAGCCTCAAGTCGTCTCTGATCCATTGCTCCACAAGAATTCTTCATAGGAAGAAAA 1318
Query 1322 TTTC-ACT--CTGTGAATCTTCAAAGAAGAAAAGTCCAATAATCAATGTTCAATCATTTG 1378
|||| | | || ||||||| | ||| || || | |||||||||||||| |||
Sbjct 1319 TTTCCAGTAACT-TGAATCT-----GT-GAATCTTC-AA-A-TCAATGTTCAATCACTTG 1368
Query 1379 TGTAAATGTAAC 1390
||||| ||||||
Sbjct 1369 TGTAACTGTAAC 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5