BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64380.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496646 jgi|Araly1|496646|fgenesh2_kg.8__2462__AT5G64380.1 2025 0.0
> Ahg496646 jgi|Araly1|496646|fgenesh2_kg.8__2462__AT5G64380.1
Length=1332
Score = 2025 bits (1096), Expect = 0.0
Identities = 1259/1338 (94%), Gaps = 9/1338 (1%)
Strand=Plus/Plus
Query 14 GTCATCTTCTATTCGTTATCCGTTTTGAAGCGTACTCGGATGGGATTGAGTTTCGCAGAT 73
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1 GTCATCTTCTATTCGTTATCCGTTTTGAAGTGTACTCAGATGGGATTGAGTTTCGCAGAT 60
Query 74 GCTTTAAATTCTAG-AAAATAATGCAATCTCTTACCTTAACTCGGTACCCAACTCCAATT 132
|||||||| || || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 61 GCTTTAAA-TCCAGAAAAATAATGCAATCACTCACCTTAACTCGGTACCCAACTCCAATT 119
Query 133 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGCTTCTGTTCTCTCTGCT 192
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 120 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGGGTCTGTTCTCTCTGTT 179
Query 193 CCGACCGCCGGTATTAACCGTCGCGATATGGCGTCTCGCCATCAGTCAACTTCCTTTAAG 252
|||||| |||| |||||| |||| ||| ||||||| | | ||| |||||||||||
Sbjct 180 CCGACCACCGG---CAACCGTAGCGAGATGACGTCTCGTCGTGAGTGTGCTTCCTTTAAG 236
Query 253 CCCCTTGCCGTTGGTCGGAATTTGACCGGAGATGATGATGATGGTTACTGTACTCTTATA 312
|||| |||||||||| || || |||||| |||| ||||||||||||||||||||| |||
Sbjct 237 TCCCTCGCCGTTGGTCAGACTTCGACCGGTGATGGTGATGATGGTTACTGTACTCTGATA 296
Query 313 GACTTTGCAGGTAGTGGAGGAGGAGAAGGGA-AAAATGTAGGAGAGGATCTTGTGGTGTT 371
||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 297 GACTTTGCAGGTAATGGAGGAGGAGAAGGGACAAAA-GTAGGAGATGATCTTGTGGTGTT 355
Query 372 GCTTTACCACTTACAACATGCTTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 431
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 356 GCTTTACCACTTACAACATGCCTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 415
Query 432 TTCTTCACTCGGAAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGACCGAGATGCGCCTAA 491
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 416 TTCTTCACTCGGCAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGATCGAGATGCCCCTAA 475
Query 492 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGT 551
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCGGGGAAAGT 535
Query 552 AGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTTA 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 536 AGCAGTAATGGCTTCTGAAGAAAACGATATTCCAACTTGGATCAAAGATGATGGTCCTTA 595
Query 612 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATTCCCACGGG 671
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 596 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATACCCACAGG 655
Query 672 AACTATATTTGGAATTTACAATCGTCTCGTTGAGCTTGATCATTTACCTGTTGAAGAGAA 731
||||||||| || ||||| || || || |||||||||||||||||||| |||||||||||
Sbjct 656 AACTATATTCGGGATTTATAACCGCCTGGTTGAGCTTGATCATTTACCAGTTGAAGAGAA 715
Query 732 AGCTGAGCTCAATTCTTTGCAGAGAGGCAGCAGGCTTGTAGCTTCCGGTTATGTGCTATA 791
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 716 AGCTGAGCTCAATTCTTTGCAGAGAGGCAACAGGCTTGTAGCTTCCGGTTATGTGCTCTA 775
Query 792 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGATCGGGAACACACGCCTTCACGCTAGA 851
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGCTCGGGAACACACGCCTTCACGCTAGA 835
Query 852 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCG-GGGAC 910
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 836 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCTACTCGAGGG-C 894
Query 911 AAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTTTAAGGAAGTACA 970
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 895 AAATCTACTCAGTGAATGATGCGAGGTACTTCGATTGGCCAGAAGGTTTAAGGAAGTACA 954
Query 971 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAATACTCTGCGCGTTATATTT 1030
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 955 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAGTACTCGGCGCGTTACATTT 1014
Query 1031 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGTGGAGTGGCTATGAATCCAA 1090
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGCGGAGTGGCTATGAATCCAA 1074
Query 1091 GAGACCATCTTCGTTTAGTCTATGAAGGTAACCCTTTGGCTTTTCTCGTGGAGCAAGCTG 1150
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1075 GAGACCATCTTCGTTTAGTCTACGAAGGAAACCCTTTGGCTTTTCTCGTGGAACAAGCTG 1134
Query 1151 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1194
Query 1211 AAAGATTGCCTCTGTTTCTTGGGAGCTTAGAGGATGTTGCTGAGCTAGAGAGCTATGGAG 1270
| || ||||||||||||||||||||| ||||||||||| ||||||| || ||||||| ||
Sbjct 1195 AGAGGTTGCCTCTGTTTCTTGGGAGCGTAGAGGATGTTACTGAGCTTGAAAGCTATGCAG 1254
Query 1271 ATGTGCAGCAGACTGTGAACCCTGGCTATGAAGTTTAAACAACTCCTCTGTTTCATATTA 1330
||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||
Sbjct 1255 ATGTGCAGCAGACTGTGAATCCTGGCTATGAAGTTTAAACGATTCCTCTGTTTCATACTA 1314
Query 1331 TCTGTAAAAACAATAAAT 1348
| |||||||| |||||||
Sbjct 1315 TGTGTAAAAATAATAAAT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5