BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64380.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg496646 jgi|Araly1|496646|fgenesh2_kg.8__2462__AT5G64380.1 2025 0.0 > Ahg496646 jgi|Araly1|496646|fgenesh2_kg.8__2462__AT5G64380.1 Length=1332 Score = 2025 bits (1096), Expect = 0.0 Identities = 1259/1338 (94%), Gaps = 9/1338 (1%) Strand=Plus/Plus Query 14 GTCATCTTCTATTCGTTATCCGTTTTGAAGCGTACTCGGATGGGATTGAGTTTCGCAGAT 73 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1 GTCATCTTCTATTCGTTATCCGTTTTGAAGTGTACTCAGATGGGATTGAGTTTCGCAGAT 60 Query 74 GCTTTAAATTCTAG-AAAATAATGCAATCTCTTACCTTAACTCGGTACCCAACTCCAATT 132 |||||||| || || |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 61 GCTTTAAA-TCCAGAAAAATAATGCAATCACTCACCTTAACTCGGTACCCAACTCCAATT 119 Query 133 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGCTTCTGTTCTCTCTGCT 192 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 120 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGGGTCTGTTCTCTCTGTT 179 Query 193 CCGACCGCCGGTATTAACCGTCGCGATATGGCGTCTCGCCATCAGTCAACTTCCTTTAAG 252 |||||| |||| |||||| |||| ||| ||||||| | | ||| ||||||||||| Sbjct 180 CCGACCACCGG---CAACCGTAGCGAGATGACGTCTCGTCGTGAGTGTGCTTCCTTTAAG 236 Query 253 CCCCTTGCCGTTGGTCGGAATTTGACCGGAGATGATGATGATGGTTACTGTACTCTTATA 312 |||| |||||||||| || || |||||| |||| ||||||||||||||||||||| ||| Sbjct 237 TCCCTCGCCGTTGGTCAGACTTCGACCGGTGATGGTGATGATGGTTACTGTACTCTGATA 296 Query 313 GACTTTGCAGGTAGTGGAGGAGGAGAAGGGA-AAAATGTAGGAGAGGATCTTGTGGTGTT 371 ||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||| Sbjct 297 GACTTTGCAGGTAATGGAGGAGGAGAAGGGACAAAA-GTAGGAGATGATCTTGTGGTGTT 355 Query 372 GCTTTACCACTTACAACATGCTTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 431 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 356 GCTTTACCACTTACAACATGCCTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 415 Query 432 TTCTTCACTCGGAAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGACCGAGATGCGCCTAA 491 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 416 TTCTTCACTCGGCAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGATCGAGATGCCCCTAA 475 Query 492 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGT 551 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 476 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCGGGGAAAGT 535 Query 552 AGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTTA 611 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 536 AGCAGTAATGGCTTCTGAAGAAAACGATATTCCAACTTGGATCAAAGATGATGGTCCTTA 595 Query 612 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATTCCCACGGG 671 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 596 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATACCCACAGG 655 Query 672 AACTATATTTGGAATTTACAATCGTCTCGTTGAGCTTGATCATTTACCTGTTGAAGAGAA 731 ||||||||| || ||||| || || || |||||||||||||||||||| ||||||||||| Sbjct 656 AACTATATTCGGGATTTATAACCGCCTGGTTGAGCTTGATCATTTACCAGTTGAAGAGAA 715 Query 732 AGCTGAGCTCAATTCTTTGCAGAGAGGCAGCAGGCTTGTAGCTTCCGGTTATGTGCTATA 791 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 716 AGCTGAGCTCAATTCTTTGCAGAGAGGCAACAGGCTTGTAGCTTCCGGTTATGTGCTCTA 775 Query 792 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGATCGGGAACACACGCCTTCACGCTAGA 851 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 776 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGCTCGGGAACACACGCCTTCACGCTAGA 835 Query 852 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCG-GGGAC 910 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 836 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCTACTCGAGGG-C 894 Query 911 AAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTTTAAGGAAGTACA 970 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 895 AAATCTACTCAGTGAATGATGCGAGGTACTTCGATTGGCCAGAAGGTTTAAGGAAGTACA 954 Query 971 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAATACTCTGCGCGTTATATTT 1030 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 955 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAGTACTCGGCGCGTTACATTT 1014 Query 1031 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGTGGAGTGGCTATGAATCCAA 1090 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1015 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGCGGAGTGGCTATGAATCCAA 1074 Query 1091 GAGACCATCTTCGTTTAGTCTATGAAGGTAACCCTTTGGCTTTTCTCGTGGAGCAAGCTG 1150 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 1075 GAGACCATCTTCGTTTAGTCTACGAAGGAAACCCTTTGGCTTTTCTCGTGGAACAAGCTG 1134 Query 1151 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1194 Query 1211 AAAGATTGCCTCTGTTTCTTGGGAGCTTAGAGGATGTTGCTGAGCTAGAGAGCTATGGAG 1270 | || ||||||||||||||||||||| ||||||||||| ||||||| || ||||||| || Sbjct 1195 AGAGGTTGCCTCTGTTTCTTGGGAGCGTAGAGGATGTTACTGAGCTTGAAAGCTATGCAG 1254 Query 1271 ATGTGCAGCAGACTGTGAACCCTGGCTATGAAGTTTAAACAACTCCTCTGTTTCATATTA 1330 ||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| || Sbjct 1255 ATGTGCAGCAGACTGTGAATCCTGGCTATGAAGTTTAAACGATTCCTCTGTTTCATACTA 1314 Query 1331 TCTGTAAAAACAATAAAT 1348 | |||||||| ||||||| Sbjct 1315 TGTGTAAAAATAATAAAT 1332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5