BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64390.3
Length=2969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918231 jgi|Araly1|918231|Al_scaffold_0008_2982 2525 0.0
> Ahg918231 jgi|Araly1|918231|Al_scaffold_0008_2982
Length=2598
Score = 2525 bits (1367), Expect = 0.0
Identities = 1588/1689 (94%), Gaps = 37/1689 (2%)
Strand=Plus/Plus
Query 1011 TGCTTTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGAGGC 1070
||||||||||| |||| ||||||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 945 TGCTTTACGCAGGCATGTTGAGGCGGACCGACAAGATGCTTTACGCAGGCATATTGAGGC 1004
Query 1071 GGACCGGCAAGATGCTTTACGCAGGCGTATTGATGTAGTTCCTCAAGAAACGTTATACAT 1130
||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1005 AGACCGGCAAGATGTTTTACGCAGGCATATTGATGTGGTTCCTCGAGAAACGTTATACAT 1064
Query 1131 GCCTTCTGATGTTCTCAGGGGAGATTGTTTTCGACAGCATAGAGAGAGGGATGATTCTCA 1190
|||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1065 GCCTTCCGATGTTGTCAGGGGAGATTGTTTTCGACAGCATAAAGAGAGGGATGATTCTCA 1124
Query 1191 TGATTCCTTGCATAGACCTTTCGAAATGGTTCCACGTGATGCTATGGGCATGCCTTTTGA 1250
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1125 TGATTCCTTGCATAGACCTTTCGAGATGGTTCCACGTGATGCTATGGGCATGCCTTTTGA 1184
Query 1251 GTCGTTTCCACGTGATGCTTACGGAAGGCCTATTGAAACAATGACACAAGAAACTCTTCG 1310
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1185 GTCGTTTCCACGTGATGCTTACGGAAGGCCTATTGAAACAATCCCACAAGAAACTCTTCG 1244
Query 1311 TGGGCAAAGTGCAGATTATCTTGCACATCGTTATTCGACTTTAGACACACATCCTCACAG 1370
| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1245 TCGGCAAAGTGCAGATTATCTTGCACATCGTTATTCGACTCTAGACACACA---T---AG 1298
Query 1371 C-TTCACTACGTCTGCTTCAATGGCTAACACTGCCACCATGAAGCCACCTCCATCAGAAG 1429
| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1299 CATT-ACTACGTCTGCTTCAATAGCTAACACTGCCTCCATGAAGCCACCTCCATCAGAAG 1357
Query 1430 TGGAAGTAGGGAACCAAGATGTGGTTTTTAAGATACTTTGTTCCACTGAGAATGCTGGCG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TGGAAGTAGGGAACCAAGATGTGGTTTTTAAGATACTTTGTTCCACTGAGAATGCTGGCG 1417
Query 1490 GAGTTATCGGGACTGGAGGTAAAGTTGTCAGGATGCTTCATAGCGAAACAGGTGCCTTCA 1549
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAGTTATCGGGAGTGGGGGTAAAGTTGTCAGGATGCTTCATAGCGAAACAGGTGCCTTCA 1477
Query 1550 TAAATGTGGGAAATACACTTGATGATTGTGAAGAACGTCTGATTGCAGTAACTGCATCAG 1609
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1478 TAAATGTGGGAAATACACTTGCTGATTGTGAAGAACGTCTGATTGCAGTAACTGCACCAG 1537
Query 1610 AGAACCCTGAATGTCAAAGCTCGCCAGCCCAGAAAGCGATTATGCTTATTTTTTCAAGAT 1669
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1538 AGAACCCTGAATGTCAAAGCTCGCCAGCCCAGAAAGCTATTATGCTTCTTTTTTCTAGAT 1597
Query 1670 TATTTGAGCTTGCCACTAACAAAATCCTAGATAATGGCCCAAGGTCATCTATCACTGCAC 1729
||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1598 TATTTGAGCTTTCCACTAAAAAAATCCTAGATAATGGCCCAAGGACATCTATCACTGCAC 1657
Query 1730 GGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGGAAAAGGAGGTGTTATTGTTT 1789
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1658 GGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGGGAAAGGAGGTGTTATTGTTT 1717
Query 1790 CGGAAATGCGGAAAACCACTGGGG-CTGCAATTCAAATTTTGAAGGTTGAGCAGAACCCA 1848
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1718 CAGAAATGCGGAAAACCACTGGGGCCT-CAATTCAAATTTTGAAGGTTGAGCAGAACCCA 1776
Query 1849 AAATGTATTTCAGAGAATGATCAAGTTGTGCAGATTACAGGAGAGTTCCCTAATGTGAGA 1908
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1777 AAATGTGTTTCAGAGAATGATCAAGTTATCCAGATTACAGGAGAGTTCCCTAATGTGAGA 1836
Query 1909 GAAGCCATTTTCCATATTACAAGCAGGCTGCGAGACAGTGTTTTCTCCAACTCAATGAAA 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 GAAGCCATTTTCCATATTACAAGCAGGCTGCGAGACAGTGTTTTCTCCAACTCAATGAAA 1896
Query 1969 AATTCCTTAGCCAAGAGCAGCTCCGCCTTAACTACTGAGAGATTCTACGACAGACAATCA 2028
|||||| || ||||||||||||||||||||||||| |||||| ||||| |||||||| ||
Sbjct 1897 AATTCCATAACCAAGAGCAGCTCCGCCTTAACTACAGAGAGAATCTACCACAGACAACCA 1956
Query 2029 GACAATCCTCTGTCTATTGGGTCTCATCAATCCGTTAGTAATCCAGCTACCAACTCCTCA 2088
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1957 GATAATCCTCTGTCTATTGGGTCTCATCAATCCGTTAGTAATCCACCTACCAACTCTTCA 2016
Query 2089 AGTCTGCACAGAAGATCTGAGGATTCCTTTTTAAGTGGGTCTCATTCATCAGTTAACTAT 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 AGTCTGCACAGAAGATCTGAGGATTCCTTTTTAAGTGGGTCTCATTCATCAGTTAACTAT 2076
Query 2149 TCCAGATCAGTTGGCACAGATCCTTACATAAGACCAGAAGACCCATTTCCTGATAGGTTT 2208
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2077 TCCAGACCTGTTGGCACAGATCCTTACATAAGACCAGAAGACCCGTTTCCTGATAGGTTT 2136
Query 2209 AATCCCTCAGCAGGCTATTCTCATAATTTTGGTCGGCGGTTTACCATGGACCACAGTGAT 2268
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2137 AATCCCTCTGCAGGCTATTCTCCTAATTTTGGTCGGCGGTTTACCATGGACCACAGTGAT 2196
Query 2269 AACTCCCATCACTTAACTGAGGCCCCATCTCGTTTGTGGGCGTCCCCGCCTCCAGCAGCT 2328
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2197 ATCTCCCATCACTTAAGTGAGGTCCCATCTCGTTTGTGGGCGTCCCCGCCTCCAGCAGCT 2256
Query 2329 CCAAGAGGCTTATCTGATGCCAGTGGCGGATTATCTTCTGCAAGGGCTGGCCATGTACTT 2388
||||||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 2257 CCAAGAGGCTTATCTGATGCCAGTGGCGGATTATCTTCTGCTA-----GG----G--C-T 2304
Query 2389 GGCAGTTTACATGCTCGCTTGGTCTTTTCTAGTGGACACAAATCTGCCATCGTTACAAAC 2448
||| |||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 2305 GGC------CATG--CGCTTGG------C-AGTGGACACAAATCTGCCATCGTTACAAAC 2349
Query 2449 ACTACCGTGGAAATTAGAGTTCCAGCTAATGCTATGAGCTTTGTGTATGGAGAGCAGGGT 2508
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2350 ACAACCGTGGAAATTAGAGTTCCAGAAAATGCTATGAGCTTTGTGTATGGAGAGCAGGGC 2409
Query 2509 TACAATCTGGAACAACTGAGACAGATATCGGGTGCAAGGGTCATAATCCATGAACCTCCT 2568
|||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2410 TACAATCTAGAGCAACTGAGACAGATATCGGGTGCGAGGGTCATAGTCCATGAACCTCCT 2469
Query 2569 CTAGGAACAAGTGACAGGATCATTGTCATATCTGGAACACCTGATCAAACCCAGGCTGCC 2628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470 CTAGGAACAAGTGACAGGATCATTGTCATATCTGGAACACCTGATCAAACCCAGGCTGCT 2529
Query 2629 CAAAACCTTCTTCATGCCTTCATCCTTACAGGTGAAACCTCATTGTCCAAAAAATACAAC 2688
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2530 CAAAACCTCCTTCATGCCTTCATCCTTACAGGTGAAACCTCATTGTCCAAAAAATACAAC 2589
Query 2689 CTAAACTAG 2697
|||||||||
Sbjct 2590 CTAAACTAG 2598
Score = 1533 bits (830), Expect = 0.0
Identities = 937/989 (95%), Gaps = 6/989 (1%)
Strand=Plus/Plus
Query 118 TTTCATGCAGAGAAGAGATCCGGAGCGTTTGATCCAGGTTCAGGATTCGGATCTTCCAAG 177
||| || ||||||||||||||||||| | ||||| |||||||||||||||||||| |||
Sbjct 16 TTTAATACAGAGAAGAGATCCGGAGCACTGGATCCGGGTTCAGGATTCGGATCTTCGAAG 75
Query 178 AGGGTCAAAACGCATCACACGCAGCTGCTCTCAG-CTCTGGTTGTGCCGGTGGGACACGC 236
||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 76 AGGGTCAAAACACATCACACGCAGCTGCT-TCCGCCTCTGGTTGTGCCGGTGGGACACGC 134
Query 237 GGCGTTTAGATTGCTCTGCCCTTTATCACACGTCGGTGCGGTGATTGGAAAATCTGGAAA 296
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GGCATTTAGATTGCTATGCCCTTTATCACACGTCGGTGCGGTGATTGGAAAATCTGGAAA 194
Query 297 CGTAATCAAACAGCTCCAACAATCAACCGGAGCTAAGATACGGGTCGAGGAGCCTCCGTC 356
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CGTTATCAAACAGCTCCAACAATCAACCGGAGCTAAGATACGGGTCGAGGAGCCTCCGTT 254
Query 357 TGGGTCTCCGGATCGGGTCATCACGATAATCGCACAAGCAGATTCGAAATCAAGGGTGAA 416
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 255 TGGGTCTCCGGATCGGGTCATCACGATAATTGCGCAAGCAGATTCGAAATCAAGGGTGAA 314
Query 417 ATTGGGTGCTAATAACAATGGCAATGCAGAAGGAGAGAAAAAGGAGGAGGAAGTTGAGGT 476
|||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 315 ATTGGGTGTTAATAACAATGGGAATGCTGAAGGAGAGAAGAAGGAGGAGGAAGTTGAGGT 374
Query 477 ATCTAAAGCACAAGGAGCGTTGATTAAGGTATTCGAGCTTTTAGCGGCGGAAGCTGATAG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 ATCTAAAGCACAAGGAGCGTTGATTAAGGTATTCGAGCTTTTAGCGGCGGAAGCGGATAG 434
Query 537 TGATACGGTCGTGTGCCGATTGTTGACGGAGTCTAGCCATGCCGGTGCTGTGATAGGCAA 596
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 435 TGATACGGTCGTGTGCCGATTGTTGACTGAGTCTAGCCATGCTGGTGCTGTGATAGGCAA 494
Query 597 AGGTGGTCAAATGGTTGGGAGTATTAGGAAAGAAACTGGCTGCAAAATTTCTATACGGAT 656
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 495 AGGTGGTCAAATGGTGGGGAGCATTAGGAAAGAAACTGGCTGCAAAATTTCTATACGGAC 554
Query 657 TGAGAATTTGCCGATTTGCGCTGATACTGATGACGAGATGGTGGAGGTTGAAGGAAATGC 716
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 555 TGAGAATTTGCCGATTTGCGCTGATACTGATGACGAGATGGTGGAGATTGAAGGAAATGC 614
Query 717 TATCGCTGT-AAAGAAAGCTCTTGTGTCTATCTCCCGCTGCTTGCAAAATTGTCAATCGA 775
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TATTGCTGTGAAA-AAAGCTCTTGTGTCTATCTCCCGCTGCTTGCAAAATTGTCAATCGA 673
Query 776 TTGACAAGGTAAGGATGGTTGGAAACAGACCTCTCGAAAAAGAGTTCCAAGCATCTTTGC 835
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 674 TTGACAAGGTAAGGATGGTCGGAAACAGACCTCTAGAAAAAGAGTTCCAAGCATCTTTGC 733
Query 836 ATAGGCCTATAGAGACAATAATTCAGGAGTCACTTCCTAGGTCCGTTGAAGTTAACCCTT 895
||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct 734 ATAGGCCGATAGAGACAATCATTCAGGAGTCTCTTCCTAGGTCCATTGAAGTTAACCCTT 793
Query 896 ACGATTATAGGCTGAG-AAACGACGAGATATTTCCCCGGGGCACTGTAGCTCGGGCTAAT 954
|||||||||||||||| ||| ||||||||||||||||| || ||| |||||||| |||
Sbjct 794 ACGATTATAGGCTGAGGAAA-GACGAGATATTTCCCCGAGGTACTTTAGCTCGGCCTAGC 852
Query 955 GATGTGATTCCTCATGATACTTTGCATCTTAGGCGTATCGAGGCGGTTCCCCAGGGTGCT 1014
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 853 GATGTGATTCCTCATGATACTTTGCATCATAGGCATATTGAGGCGGTTCCCCAGGGTGCT 912
Query 1015 TTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGAGGCGGAC 1074
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 913 TTACGCATGCATATTGAGGCGGACCGGCAAGATGCTTTACGCAGGCATGTTGAGGCGGAC 972
Query 1075 CGGCAAGATGCTTTACGCAGGCGTATTGA 1103
|| ||||||||||||||||||| ||||||
Sbjct 973 CGACAAGATGCTTTACGCAGGCATATTGA 1001
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1011 TGCTTTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGA 1067
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 981 TGCTTTACGCAGGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATATTGA 1037
Score = 84.2 bits (45), Expect = 5e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 1023 GCATATTGAGGCAG-ACCGGCAAGATGTTTTACGCAGGCATGTTGAGGCGGACCGGCAAG 1081
|||||||||||| | || || | || |||||||| |||| ||||||||||||||||||
Sbjct 885 GCATATTGAGGCGGTTCC-CCAGGGTGCTTTACGCATGCATATTGAGGCGGACCGGCAAG 943
Query 1082 ATGCTTTACGCAGGCGTATTGA 1103
||||||||||||||| | ||||
Sbjct 944 ATGCTTTACGCAGGCATGTTGA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112099591035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5