BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64400.2

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496648 jgi|Araly1|496648|fgenesh2_kg.8__2464__AT5G64400.1         616    1e-175


> Ahg496648 jgi|Araly1|496648|fgenesh2_kg.8__2464__AT5G64400.1
Length=618

 Score =  616 bits (333),  Expect = 1e-175
 Identities = 345/351 (98%), Gaps = 0/351 (0%)
 Strand=Plus/Plus

Query  68   TCTCTCTATATCAAAATGGGTCGCCGTAGCTCAGGAGGAAGATCTGCCCCTCGCCCTCGT  127
            ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  47   TCTCTCTCTATCAAAATGGGTCGCCGTAGCTCAGGAGGAAGATCTGCTCCTCGCCCTCGT  106

Query  128  CCTGCTGCTGCACGCAGCCCAGCTCCTCAACCTGTACACCGTGCACCTCCTCCAGCTCCA  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107  CCTGCTGCTGCACGCAGCCCAGCTCCTCAACCTGTACACCGTGCACCTCCTCCAGCTCCA  166

Query  188  GCTCAGGCCAGCGGTGGTGGTGGTGGCATGTTCTCAGGCATTGGTTCAACCATTGCTCAG  247
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  167  GCTCAGGCCAGCGGTGGTGGTGGTGGCATGTTCTCAGGCATTGGTTCTACCATTGCTCAG  226

Query  248  GGTATGGCTTTTGGTACTGGAAGTGCAGTTGCACACAGGGCTGTTGATTCTGTGATGGGT  307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  GGTATGGCTTTTGGTACTGGAAGTGCAGTTGCACACAGGGCTGTTGATTCTGTGATGGGT  286

Query  308  CCACGAACCATTCAGCATGAGGCTGTTGAGGCTGCTTCTGCATCTGCAGCCCCTGCTGGA  367
            |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  287  CCACGAACCATTCAACATGAAGCTGTTGAGGCTGCTTCTGCATCTGCAGCTCCTGCTGGA  346

Query  368  AGCGCCATGCTTTCTAGCACCTGTGACATTCATGCTAAGGCTTTCCAAGAT  418
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  AGCGCCATGCTTTCTAGCACCTGTGACATTCATGCTAAGGCTTTCCAAGAT  397


 Score =  185 bits (100),  Expect = 4e-46
 Identities = 102/103 (99%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  708  TGCATCGGCAGCTATGGAAGCGAGATTAGCAAATGTCAGTTCTACATGGACATGTTGTCC  767
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  TGCATTGGCAGCTATGGAAGCGAGATTAGCAAATGTCAGTTCTACATGGACATGTTGTCC  457

Query  768  GAGTGCAGGAAGAACTCTGGTTCCGTGATTGGTGCCTAGAGTT  810
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  458  GAGTGCAGGAAGAACTCTGGTTCCGTGATTGGTGCCTAGAGTT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36407385735


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5