BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64420.1
Length=4224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496650 jgi|Araly1|496650|fgenesh2_kg.8__2466__AT5G64420.1 6348 0.0
Ahg950622 jgi|Araly1|950622|scaffold_802509.1 937 0.0
> Ahg496650 jgi|Araly1|496650|fgenesh2_kg.8__2466__AT5G64420.1
Length=4184
Score = 6348 bits (3437), Expect = 0.0
Identities = 3982/4237 (94%), Gaps = 70/4237 (2%)
Strand=Plus/Plus
Query 5 GACAGAGGAAAGCTTCACTAGTCGATTAGGGTTTCTTTCTTCT-CGCCCCAATTCCCAAA 63
||||| | ||||||||||||||||||||||| || ||| |||| ||||||| |||||||
Sbjct 1 GACAGCGAAAAGCTTCACTAGTCGATTAGGG-TT-TTT-TTCTGAGCCCCAACTCCCAAA 57
Query 64 TTCAAAATCGAAGCTTTTTTAATGGGTAGTAAGAAGAGAAGCAACGACGACTCGACGGAG 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 58 TTCAAAATCGAAGCTTTTTTAATGGGCAGTAAGAAGAGAAGCAACGACGACTCGACGGAG 117
Query 124 TTGGTGGAGAACGACAACCTCCCCGATTCTTCAATTGTGAAGAAGAAGAAATCTAAAACT 183
||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 118 GTGGTGGAGAACAACAATCTCACCGATTCTTCAATTGTGAAGAATAAGAAATCTAAAACC 177
Query 184 GAGAAGATGAATACCGTTGCTAATTATGATTCTGATAcggcggcggcggcggcggAAGTT 243
||||||||||||| | ||||||||||||||||||||||||||| | | |
Sbjct 178 GAGAAGATGAATA------C------TGATTCTGATACGGCGGCGGCGGCGGC-G--GCT 222
Query 244 CCTGGTGTTGCGAGCTCCGGTAAGGATATGGAGAAGAAGAAGATGAGAAAAGCTTCTGAT 303
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 223 CCTGGTGTCACGAGCTCCGGTAAGGATATGGAGAAGAAGAAGAAGAGAAAAGCTTCTGAC 282
Query 304 AAACAGAGGAGACTAGA-AGCTGCTCTGAAGAAAAACAATGGTGTAGGAGCTTCGCGGCC 362
||| ||||||||| | | |||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 283 AAAGAGAGGAGACGA-ACAGCTGCGCTGGAGAAAAATGATGGTGTAGGAGCTTCGCGGCC 341
Query 363 TAAGCCTATACCTGTGGCTGTAAATTCAAACTCCGATGAAGCCGACGACGAGTCTCTTCC 422
|||||||| |||||||| ||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 342 TAAGCCTAGACCTGTGGTTGTTAATTCGAACTCCGATGAAGCCGATGACGAGTCTCTTCC 401
Query 423 CTCCGCAGCCGCTTCTTCTTCCTCGTTGCCTCTGAACTATTTTACAGATTTGGCTTCTTC 482
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 402 CTCCGCAGCCG---CTTCTTCCTCGTTGCCTCTCAACTATTTTACAGATTTGGCTTCTTC 458
Query 483 TGATGCTTCCGTTAGAGAAGCAGCTGCTGAGTCGTTGGTAT-TGAGGTTGCAAGAGATTC 541
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 459 TGATGCTTCCGTTAGAGAAGCAGCTGCTGAGTCGTTGGT-TCTGAGGTTGCAAGAGATTC 517
Query 542 AGAAGCAATACGAAATGTTACCTGATAAAGAATCTGTTGATGGTGGTTTGATGCTTGAAG 601
|||||||||| || ||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 518 AGAAGCAATATGAGATGTTACCTAATAAAGAATCTGTTGACGGTGGATTGATGCTTGAAG 577
Query 602 CTGAGAAAAACGATGGTTTGGATAACTGTGCTCCTCATC-TGAGATATGCTCTACGCAGG 660
||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct 578 CTGAGAAAAACGATGGTTTGGATAACTGTGCTCCTCA-CTTGAGATATGCTCTACGAAGG 636
Query 661 CTTATTCGTGGAGTCTCTTCTTCAAGAGAGTGCGCAAGACAAGGATTTGCTTTGGGGTTG 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 637 CTTATTCGTGGAGTCTCTTCTTCAAGAGAGTGCGCAAGACAAGGATTTGCCTTGGGGTTG 696
Query 721 ACATTACCTGTTAGCGTTATTTCTAGCATTAATGTGGAATCTTTGCTGAATCTCATTGCT 780
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 697 ACATTACCTGTTAGCGTTATTTCTAGCATTAATGTGGAATCTTTGATGAACCTCATTGCT 756
Query 781 GATTCTTTGTCTGTATCTTCATCCATGACGGGACAAGATATAAAGGAATGCTTATTGGGT 840
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 757 GATTCTTTGTCTGTATCTTCATCCATGACTAGACAAGATATTAAGGAATGCTTATTGGGT 816
Query 841 CGATTGTTTGCTTATGGTGCGCTTGCACGTTCTGGAAGACTGATTGAAGATTGGCAATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CGATTGTTTGCTTATGGTGCGCTTGCACGTTCTGGAAGACTGATTGAAGATTGGCAATCT 876
Query 901 GATAAAGACTCTCCGATAATCAAAGAATTTACCAATGCTCTTATTGGTCTTGCTGCAAAA 960
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 877 GATAAAGACTCTCAGATAATCAAAGAATTTACCAATGCTCTTATTGGTCTTGCCGCAAAA 936
Query 961 AAGCGTTACTTGCAGGAACCAGCTGTGCATATTCTTCTAGACTTTGTTGACAAGTTGCCT 1020
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||
Sbjct 937 AAGCGTTACTTGCAGGAACCAGCTGTGCATGTTCTTCTAGACCTTGTTGACAAGTTACCT 996
Query 1021 ACTGAACCTGTTGTTACTCATGTTATGGAAGCTCCAGAACTTTATAAATGGTTTGAACAA 1080
|||||||||||||| ||||||||||||||| | ||||| ||| |||||| ||||||||||
Sbjct 997 ACTGAACCTGTTGTGACTCATGTTATGGAATCCCCAGAGCTTCATAAATTGTTTGAACAA 1056
Query 1081 GCCACCGAGGTGGGAAACCCAGATGCTTTGCTCTTAGCGCTGAAACTCCATGAAAAGGTT 1140
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1057 GCCACCGAGGTGGGAAACCCGGATGCTTTGCTCTTAGCGCTTAAACTCCATGAAAAGATT 1116
Query 1141 TCAGTCGATCATCCTATATTTAGCAAGCTACTGCCAGTTCCTTTCAGTTCCGGGAAGttt 1200
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TTAGTCGATCATCCTGTATTTAGCAAGCTACTGCCAGTTCCTTTCAGTTCCGGGAAGTTT 1176
Query 1201 ttttCTGCTGATCATCTCACTGCCATTGGTAATTGCTTGAAGGAATCTACTTTCTGCCAG 1260
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1177 TTTTCTGCTGATCATCTCTCTGCCATTAGTAATTGCTTGAAGGAATCTACTTTCTGCCAG 1236
Query 1261 CCTCGTGTTCATAGCTTATGGCCTGTTATAGTCGATATGCTGTTACCGGAAGCAGTTGTT 1320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CCTCGTGTTCATAGCTTATGGTCTGTTATAGTCGATATGCTGTTACCGGAAGCAGTTGTT 1296
Query 1321 CAAAGCGAAGATGTCGTATCTGTTTCAAGTTCCTCGAAAAAGCAAAAACGTAACCGGAAG 1380
||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1297 CAAAGTGAAGATGTCATATCTGTTTCAAGTTCCTCGAAAAAGCAAAAACGGAACCGCAAG 1356
Query 1381 TCTAAT-CCAGTTGAAGAAGAAGCCACAAATAACATCAGAAATTTCTGCGAAGTTTTTAT 1439
|| ||| ||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 1357 TCCAATCCCA-TTGAAGAAGAAGCCACAAATAACATCAGGAATTTCTGCCAAGTTATTAT 1415
Query 1440 GGAAGGAGAC-CTACTTTCTTCAACTCATGTTCGCAAGCATTTGGCATTTGATATCCTGC 1498
|||||||| | || ||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1416 GGAAGGAG-CACTGCTTTCTTCATCTCATGATCGCAAGCATTTGGCATTTGATATTCTGC 1474
Query 1499 TTCTTCTTCTTCCAAAGCTTCCTGCAAGTTTTATCCAACATGTATTGTCGCTCAAATTTG 1558
||||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||
Sbjct 1475 ATCTTCTTCTTCCAAAGCTTCCGGCAAGTTTTGTCCAACATGTATTATCGCTCCAATTTG 1534
Query 1559 TTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTGGTTGCATAAAGTTGCCACCC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1535 TTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTGGTTGCATAAAGTTGCAACCC 1594
Query 1619 ATTTTCTTGTCGAGTTAATGGATTGGGTGAAAGATGACGATACCAAGAGGGTGGCCGTTA 1678
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1595 ATTTTCTTGCCGAGTTAATGGATTGGGTGAAAGACGACGATACCAAGAGGGTGGCCGTTA 1654
Query 1679 CAATGGCTCTCCAGAAACACAGCGAAGGAAAATTTGATAATATTACGCGGACAAAAACTG 1738
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1655 CAATGGCTCTCCAGAAACATAGCGAAGGAAAATTTGATAATATTACGCATACAAAAACTG 1714
Query 1739 TTAAAGTTCTAGCTGCAGAGCTTGAAACTGAAGATGGTTGCACACTTTATCTCCAGAACT 1798
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TTAAAGATCTAGCTGCAGAGTTTGAAACTGAAGATGGTTGCACACTTTATCTCCAGAACT 1774
Query 1799 TGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAAGAATCTTCAAATATGAAATGGT 1858
|||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1775 TGATGAATATGTTTGTGGATGAACAGCATGTTCCTGAGGAACCTTCAAATATGAAATGGT 1834
Query 1859 CCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAACAACGGATGATAATTCTGACA 1918
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1835 CCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAACTACAGATGATAATTCTGAC- 1893
Query 1919 AT-GGTTCAAATGAGGAGAAGGATTCAGTTGGAACAACCGGAAACTCGGATGTTCTGAAA 1977
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1894 ATAGGTTCAAACGAGGAGAAGGATTCAGTTGGAACAACCGGAAACTCGGATGTTCTAAAA 1953
Query 1978 AGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATGCTAAATTGTCCCCTGAGGCG 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1954 AGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATGCTAAATTGTCCCCCGAGGCG 2013
Query 2038 AAACTGCGACTTCAGAAGCAGATCCTGAAATTTCTCGCTGTACAAGGTCTCTTTCTGGCT 2097
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 AAACTGCGAGTTCAAAAGCAGATCCTGAAATTTCTCGCTGTACAAGGTCTCTTTCTGGCT 2073
Query 2098 TCTCTGGGCACTGAAGTTACATCATTTGAGTTGCAGGAGAAATTTAAGTGGCCAAAGACA 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 TCTCTGGGCACTGAAGTTACATCATTTGAGTTGCAGGAGAAATTTAAGTGGCCAAAGACA 2133
Query 2158 GCTACTCCTGCTGCTCTTTGCCAAATGTGCATCGAACAGCTTCAGCTGTTGCTGTCAAAT 2217
|||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2134 GCTACTCCCGCTGCCCTTTGCAAAATGTGCATCGAACAGCTTCAGCTATTGCTGTCAAAT 2193
Query 2218 TCTCAGAAGATTGAGAAACCACTATCTAAAGGAAATGCCCTGGAACAGCCCGATGATCCT 2277
||||||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 2194 TCTCAGAAGATTGAGAATCCACTATCTAAAGGAAATGGCATGGAGCAGCCTGATGATCCT 2253
Query 2278 GTTTCATACTTTATGAAATTCCTTAGCACGTTGCAGAATATTCCCTCAGTTTCCCTCTTC 2337
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2254 GTTTCGTACTTTATGAAATTCCTTAGCACGTTGCAGAATATTCCCTCAGTTTCCCTCTTC 2313
Query 2338 CGTTCCTTGAATGAAGCAGATGAAAAGGCTTTCAAAGAATTACAAGAAACAGAAAGTAAA 2397
||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||
Sbjct 2314 CGTTCCTTGAATGAAGCAGATGAGAAGGCATTCAAAAAATTACAAGAAACAGAGAGTAAA 2373
Query 2398 CTTTTAAAGGAGGAAAGAAATTGTGGACTATCTACTGATCCAAATAAATTTCATGCATTG 2457
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2374 CTTTCAAAGGAGGAAAGAAATTGTGGACTAGCTACTGATCCAAATAAATTTCATGCATTG 2433
Query 2458 AGGCACTTAGTTGTTCAGCTGTTGCTTCAAATACTCCTCCATCCGGGAGAATTCTCAGAA 2517
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2434 AGGCACTTAGTTGTTCAGCTGTTGCTTCAAATACTCCTCCATCCGGGAGAGTTCTCAGAA 2493
Query 2518 GCTGCTACTGAACTTTCAGTATGCTGTGACAAAGCTTTCAGTTCTCTTGATCTTCTGAAA 2577
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2494 GCTGCAACTGAGCTTTCAGTATGCTGTGACAAAGCTTTCAGTTCTCTTGATCTTCTAAAA 2553
Query 2578 AGTGATGGGCAAGGTGAGGCAGACGATGAAGAAGAACCAGCAGTCATGGATGTCCTCGTG 2637
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554 AGTGATGGGGAAGGTGAGGCAGACGATGAAGAAGAACCAGCAGTCATGGATGTCCTCGTG 2613
Query 2638 GACACATTACTTTCTCTCTTGCCGCATTCTTCAGCTCCAATGCGGTCTTCTATTGAGCAG 2697
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2614 GACACTTTACTTTCTCTCTTGCCGCATTCTTCAGCTCCAATGCGATCTTCTATTGAGCAG 2673
Query 2698 GTTTTTAAGTACTTTTGTCAAGATGTCACCAACGATGGACTGCTGAGAATGTTGCGGGTG 2757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 GTTTTCAAGTACTTTTGTCAAGATGTCACCAACGATGGACTGCTGAGAATGTTGCGGGTG 2733
Query 2758 ATCAAGAAAGATCTAAAACCGTCTAGACATCAGGAGGACCAAGACTCTGACGATC-T--T 2814
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
Sbjct 2734 ATCAAGAAAGATCTAAAACCGGCTAGACATCAGGAGGACCAAGACTCTGAGGATCGTGAT 2793
Query 2815 GATGATGATGAAGAAGATTGTCTTGCTATTGAAGATGCAGAAGAAGAAAACGAGGAGATG 2874
||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 2794 GATGATGATGATGAAGATTGTCTTGCTATTGAAGAGGAAGAAGAAGAAAACGAGGAAATG 2853
Query 2875 GGTGAAACTGGTGAGAGCGATGAGCAGACTGATGATTCCGAAGCAGTAACCGGCGTTGTC 2934
|| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2854 GGCGAGACTGGTGAGAGCGATGAGCAGACTGATGATTCTGAAACAGTAACCGGCGTTGTC 2913
Query 2935 CCTATGGCAGTTGACAGAGAAGTTCCTGAAAATTCCgatgattctgatgatgatgatgga 2994
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2914 CCTATGGCAGTTGACAGAGAAGTTCCTGAAAATTCTGATGATTATGATGATGATGATGGA 2973
Query 2995 atggatgatgatgCAATGTTCCGCATGGACACTTACCTTGCCCAGATATTCAAGGAGAAG 3054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 ATGGATGATGATGCAATGTTCCGCATGGACACTTACCTTGCCCAGATATTCAAGGAGAAG 3033
Query 3055 AGGAATCAAGCTGGCGGCGAAACTGCTCAGTCCCAGCTTGTTTTGTTTAAACTCCGTGTC 3114
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3034 AGGAATCAAGCTGGCGACGAAAGTGCTCAGTCCCAGCTTGTTTTGTTTAAACTCCGTGTC 3093
Query 3115 CTCTCCCTTCTTGAAATCTACCTCCATGAAAATTCAGATAAGCCACAAGTTATGACAGTG 3174
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 3094 CTCTCCCTTCTTGAAATCTACCTCCATGAAAATCCAGATAAGCCTCAAGTTATGACAGTG 3153
Query 3175 TACTTAAACTTAGTTCAGGCAATGCTGAACCCAAGCACTGCAGAAAGTAGTCTGCCGCTT 3234
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3154 TACTTAAACTTAGCTCAGGCAATTCTGAACCCAAGCACTGCAGAAAGTAGTCTGCCGCTT 3213
Query 3235 TTACAACGTATATGGGGCATCATTCAGAAGAAGATCTTCAAGGCTAAAGAGTTTCCCAAG 3294
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 3214 TTACAACGTATATGGGGTATCATTCAGAAGAAGATCTTCAAGGCTAAAGAGTATCCCAAG 3273
Query 3295 GATGAATCAATGGAATTTTCTGCACTTGCTTCTTTGTTGGAGAAGAATCTTAAACTGGCT 3354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3274 GATGAATCAATGGAATTTTCTGCACTTGCTTCTTTGTTGGAGAAGAATCTTAAACTGGCT 3333
Query 3355 GCGAAACCATTCAAGAGTAAGAAGTCAGGAGTTGACCCTTCCAAGAAGAAGCAGTCAGCT 3414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3334 GCGAAACCATTCAAGAGTAAGAAGTCAGGAGTTGACCCTTCCAAGAAGAAGCAGTCAGCT 3393
Query 3415 GCGTGGAACCGATACAAGATGATCACCCACCTTGGCCAGAACTCAACTTACTGGGTTATG 3474
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 3394 GCGTGGAACCGATACAAGATAATCACTAACCTTGGCCAGAACTCAACTTACTGGGTTATG 3453
Query 3475 AAGATAATTGACTCGAGAAAATTCTCAGAAACTGAATTGGAGAAGATCTTGGATGTGTTT 3534
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 3454 AAGATAATTGACTCGAGAAATTTTTCAGAAACTGAATTGGAGAAGATCTTGGATATGTTT 3513
Query 3535 CGGAGTGCTGTTACCGGGTACTTTGATAGCAGGAAGTCTCAGTTGAAGATAGATTTTCTT 3594
|||||||| ||| ||||||||||||| |||||| |||||| |||||||||| ||||||
Sbjct 3514 CGGAGTGCCGTTGTGGGGTACTTTGATACCAGGAAATCTCAGATGAAGATAGAGTTTCTT 3573
Query 3595 GAGGAAGTGTTTAGAAGGAGACCATGGATTGGACACCAACTGTTTGGTTTCCTTCTGGAG 3654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3574 GAGGAAGTGTTTAGAAGGAGACCATGGATTGGACACCAACTGTTTGGTTTCCTTCTGGAG 3633
Query 3655 -GCAAGTGTGAATGCAAATGTTGAGTTCCGTAGACTGGAAGCTCTTGATTTGATCACTGA 3713
| ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 3634 AG-AAGTGGGAATGCAAAGGTTGAGTTCCGTAGACTGGAAGCACTTGATTTGATCACTGA 3692
Query 3714 AACTCTGAGATCGTTGATTCCTATAAACGAAAACACCCAAGCAGATTCGAGAAAAACAAT 3773
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 3693 AACTCTGAGATCGTTGGTTCCTATAAACGAAAACACCCAAGAAGATTCGAAAAAAACAAT 3752
Query 3774 GACGACCCATCTGAAGGAACTGATTCTTTTGATTAAAGAACTAGTTGGAAACATGCCTGA 3833
|| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 3753 GAAGACCCATCTGAAGAAACTGATTCATTTGATTAAAGAACTAGTTGCAAATATGCCTGA 3812
Query 3834 GGCTAAAGTAAGGCGAGCTCAGGTGCGTAAATTCTGTGGCAGGATCTTTCAGATGGTCTC 3893
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3813 GGCTAAAGTAAGGCGAGCTCAGGTGCGTAAGTTCTGTGGCAGGATCTTTCAGATGGTCTC 3872
Query 3894 TTCGTTGAAACTCACCAAATCTTTCCTCAAGGGGTTGGGACAAGATGGTCGAA-CAGCAT 3952
|||||||||||||||||| ||| |||||||||| ||||||| |||||||| || ||||||
Sbjct 3873 TTCGTTGAAACTCACCAACTCTCTCCTCAAGGGTTTGGGACCAGATGGTC-AATCAGCAT 3931
Query 3953 GTGAAGATGCA-TTCGGTGATCTCTTCTTGAATCTGAAGAATACAGAGCATTAACGCA-G 4010
||||| |||| || ||| |||| ||||||||||| |||||||| ||||||||||||| |
Sbjct 3932 GTGAATCTGCACTT-GGTTATCTGTTCTTGAATCTCAAGAATACGGAGCATTAACGCAAG 3990
Query 4011 ACTACTCCAAAGTATCACCATACGTTGATCTTGGTGAAACCCTCGTCttttttttttgtt 4070
||||||||| |||||| || | | | | | ||| || | ||||| |||| |
Sbjct 3991 -CTACTCCAA-GTATCATCAC-CAT--A-C--GCTGA-----TC-T-TTTTTCTTTT-T- 4033
Query 4071 tttCTTGTGTTATCTTTCTATGAAGAAAAACTCGCAGGATCTGAATCACA--AGTTTGAA 4128
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 4034 ---CTTGTTTTATCTTTCTATGAAGAAAA-CTTGCAGGATCTGAATCACACCAGTTTGAA 4089
Query 4129 TAGGATTTCTCC-TATTCATTGATTCCAAAAGATACTACATTCTCACTTATGTCCCAAAG 4187
|||||||| ||| ||||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct 4090 TAGGATTT-TCCCTATTCATGGATTCCAAAAGATATTACATTCTCACTT-TGTCCTAAAG 4147
Query 4188 AGATGATTTGTTATGATAATTCATCAATTTTGTTTTC 4224
|||||||||||| ||||||||||||||||||||||||
Sbjct 4148 AGATGATTTGTTTTGATAATTCATCAATTTTGTTTTC 4184
> Ahg950622 jgi|Araly1|950622|scaffold_802509.1
Length=688
Score = 937 bits (507), Expect = 0.0
Identities = 589/629 (94%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 1420 AATTTCTGCGAAGTTTTTATGGAAGGAGACCTACTTTCTTCAACTCATGTTCGCAAGCAT 1479
|||||||| ||| ||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 3 AATTTCTGTGAATTTTTTATGGAAGGAGCCCTACTTTCTTCATCTCATGATCGCAAGCAT 62
Query 1480 TTGGCATTTGATATCCTGCTTCTTCTTCTTCCAAAGCTTCCTGCAAGTTTTATCCAACAT 1539
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 63 TTGGCATTTGATATCCTGCTTCTTCTTCTTCCAAAGCTTCCTGTAAGTTTCGTGCAACAT 122
Query 1540 GTATTGTCGC-TCAAATTTGTTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTG 1598
|| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTTTTGTC-CTTCAAATTTGTTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTG 181
Query 1599 GTTGCATAAAGTTGCCACCCATTTTCTTGTCGAGTTAATGGATTGGGTGAAAGATGACGA 1658
||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 182 GTTGCATAAAGTTGCAACCCATTTTCTTGTGGAGTTAATTGATTGGGTGAAAGACGACGA 241
Query 1659 TACCAAGAGGGTGGCCGTTACAATGGCTCTCCAGAAACACAGCGAAGGAAAATTTGATAA 1718
||||||||||||||| |||||||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 242 TACCAAGAGGGTGGCTGTTACAATGGCTCTTCAGAAACACAGTGAAGGGAAATCTGATAA 301
Query 1719 TATTACGCGGACAAAAACTGTTAAAGTTCTAGCTGCAGAGCTTGAAACTGAAGATGGTTG 1778
||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 302 TATTACGCGTACAAAAACTGTTAAAGATCTAGCTGCAGAGTTTGAAACTGAAGATGGTTG 361
Query 1779 CACACTTTATCTCCAGAACTTGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAAGA 1838
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 CACACTTTTTCTCCAGAACTTGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAGGA 421
Query 1839 ATCTTCAAATATGAAATGGTCCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAAC 1898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACCTTCAAATATGAAATGGTCCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAAC 481
Query 1899 AACGGATGATAATTCTGACA-ATGGTTCAAATGAGGAGAAGGATTCAGTTGGAACAACCG 1957
||| ||||| |||||||| | | |||||||| |||||||||||||||||||| ||| | |
Sbjct 482 AACAGATGACAATTCTGAGATA-GGTTCAAACGAGGAGAAGGATTCAGTTGGGACAGCTG 540
Query 1958 GAAACTCGGATGTTCTGAAAAGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATG 2017
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAACTCGGATCTTCTGAAAAGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATA 600
Query 2018 CTAAATTGTCCCCTGAGGCGAAACTGCGA 2046
|||||||| |||| |||||||||||||||
Sbjct 601 CTAAATTGGCCCCCGAGGCGAAACTGCGA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159727633881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5