BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64430.1
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496651 jgi|Araly1|496651|fgenesh2_kg.8__2467__AT5G64430.1 2486 0.0
> Ahg496651 jgi|Araly1|496651|fgenesh2_kg.8__2467__AT5G64430.1
Length=1858
Score = 2486 bits (1346), Expect = 0.0
Identities = 1744/1919 (91%), Gaps = 95/1919 (5%)
Strand=Plus/Plus
Query 1 ATTTCTTTCTAATTTCTTCTCTTCATGAATTAA---GCCAA-ACCAACaaaaaaaaTCAT 56
|||||||||||| |||||||||||||||||||| |||| | || ||||||||||||
Sbjct 1 ATTTCTTTCTAAATTCTTCTCTTCATGAATTAATCCCCCAACAAAAAAAAAAAAAATCAT 60
Query 57 TTAATTTTC-GCGGAGAGATGGAGAAATTCTCGTACAACTCTTATCCAGATTCAACCGAC 115
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAATTTTCGGC-GAGAGATGGAGAAATTCTCGTACAACTCTTATCCAGATTCAACCGAC 119
Query 116 TCGTCACCGAGATCTCGTGAGATCGAATTCGATAACCCGCCGCCTCCATGGGATGATCAG 175
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TCGTCACCGAGATCTCGTGAGATCGAATTCGATAACCCGCC---TCCATGGGATGATCAG 176
Query 176 AACCAGAACCAGCAGCAACATAGCTACAAGGTGAAGTTTATGTGCAGCTATGGCGGCAAG 235
|||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 177 AACCAGAACCAGCAGCAACAGAGCTACAAGGTGAGGTTTATGTGTAGCTATGGCGGCAAG 236
Query 236 ATTCAGCCACGGCCTCACGATAATCAGCTCACTTACGTAAACGGAGAAACGAAGATTCTT 295
||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 237 ATTCAGCCACGGCCTCATGATAATCAGCTTACTTATGTTAACGGAGAAACCAAGATCCTC 296
Query 296 TCCGTTGATCGCGGGATTAGATTCCCTGTTTTAGCTTCCAAACTCTCCA-CCGTATGCGG 354
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 297 TCCGTTGATCGCGGGATTAGATTCCCTGTTTTAGCTTCCAAACTCTC-AGCCGTATGCGG 355
Query 355 CGGCGGTGATGGCGGCGGAGGAGAAGTTACGTTTAAGTATCAGCTTCCGGGAGAAGACTT 414
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 356 CGGCGGTGATGGCGGCGGAGGAGAGGTTACGTTTAAGTATCAGCTTCCAGGAGAAGACTT 415
Query 415 AGACGCTTTGATCTCGGTTACGAACGATGATGATCTGGAGCATATGATGCACGAGTACGA 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGACGCCTTGATCTCGGTTACGAACGATGATGATCTGGAGCATATGATGCACGAGTACGA 475
Query 475 TCGCTTGCTTCGTTTGTCGTCTAAGCCAGCGAGGATGCGTTTGTTTCTCTTCCCGGCTTC 534
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 TCGGTTGCTTCGTTTGTCGTCTAAGCCAGCGAGGATGCGTTTGTTTCTTTTCCCGGCTTC 535
Query 535 TTCTG-----G----ATTTGGTTCTCAAAGTTCGACTCAATCGGATCGAGATCGCTTCGT 585
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTCTGCTTCCGGTGGATTTGGTTCTCAAAGTTCGACTCAATCGGATCGAGATCGCTTCGT 595
Query 586 CGAGGCGTTGAACACTGTTCCTAGGCTATCTGAATCGGAGAAATCCGTAACTGCTCCTCC 645
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGAGGCGTTAAACACTGTTCCGAGGCTATCTGAATCGGAGAAATCCGTAACTGCTCCTCC 655
Query 646 GAATAATGCGGATTTTTTGTTTGGATCGGAGAAAGTTGCAGCTCCGCCGCCGCCACCACC 705
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 CAATAATGCGGATTTTTTGTTTGGATCCGAGAAAGTTGCAGCTCCGCCGCCGCCACCACC 715
Query 706 GGCTGAGGTGAAATTACCGGTTCCTGTGGCGTTAGAACCGCCTTTGTTTAACGATCCGCG 765
|||||||||||||||||| || || | || | |||||||||||||||| |||||||||||
Sbjct 716 GGCTGAGGTGAAATTACCAGTACCGGCGGTGATAGAACCGCCTTTGTTCAACGATCCGCG 775
Query 766 TGTGATTCAACCGGATCACGTCGTAAATCCGATGGAAATTCAAAGACAAATGCAGGAATT 825
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 776 TGTGATTCAACCGGATCACGTCGTCAATCCGATGGAAATTCAAAGACAAATGCAGGAATT 835
Query 826 TCAGAGGATGCATATTAGGGATCAAGAACAACA--A-CAACAACAGGAAGCTGTATACAG 882
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 836 TCAGAGGATGCATATTAGGGATCAAGAACAACAGCAACAACAACAGGAAGCTGTATACAG 895
Query 883 AAGGAAGAGTAACGAAGACGGTTTAATAGAAACCGGAGGTGGATACTTCTCTCCACCGTA 942
|||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 896 GAGGAAGAGTAACGAAGACGGTTTAATGGACACCGGAGGTGGATACTTTTCTCCGCCGTA 955
Query 943 CATACAAAATCCTGCGCCACCACCGCCACAGCAGACGATTCCTCAAACGAATCCGCAAGC 1002
|||||||||||| ||||| | | || | ||||||||||||||||||||| |||||
Sbjct 956 CATACAAAATCCGGCGCCGC-A-----AC--C-GACGATTCCTCAAACGAATCCACAAGC 1006
Query 1003 TCC---TCC---GATGACGACTTTCTGGCAAGGAAACCACAATCCAGGAGTCGTATTTCC 1056
||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1007 TCCACCTCCTCCGATGACGACCTTCTGGCAAGGAAACCACAATCCAGGAGGCGTATTTCC 1066
Query 1057 AACAACCACAC-ATGGATTAGGATTACCAGAGCAACCAGTTTACATGATCCCATCTCCAT 1115
||||||||||| | ||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 1067 AACAACCACACCA-GGATTAGGATTACCAGAGCAACCGGTATACATGATTCCATC-CC-- 1122
Query 1116 CTCCATCTCCGGTGTACCACGCGCCACCACCACCGCAACCGCAAGGTGTCATCAGACCAA 1175
| ||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 1123 C---ATCTCCGGTCTACCACGCGCCACCACCGCCTCAACCGCAAGGTGTCATAAGACCAA 1179
Query 1176 TA-CTTACAGGACAAGTAAACCAAGGCGGCTACTATCCTCAGGTACAGAGAGTGGCTTCA 1234
|| || ||||||||||||||||| || ||||||||||||| ||||||| || ||||||||
Sbjct 1180 TAGCT-ACAGGACAAGTAAACCATGGTGGCTACTATCCTCCGGTACAGCGAATGGCTTCA 1238
Query 1235 GATACTTACAGAGAACCACACCAATCACCGTACAACGTGGCTCAGCCACTTCAGGCACCT 1294
||||||||||| ||||||| | | ||| || ||||||||||||| || | |
Sbjct 1239 GATACTTACAGGGAACCAC-CG--T-ACC--AC---GTGGCTCAGCCAC--CA---A--T 1282
Query 1295 ATAGGAACAAAAGCAGCA-CAACAACAACAACCTCCTCCTCCTCAGCCTTTTACCTCTGG 1353
| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1283 A--GGAACAAAAGCT-CAACAACAACAACAACCTCCTCCTC---AGCCTTTTACCTCTGG 1336
Query 1354 TCCTCCACCACCGCAATACACCGCAGTACCACCGCCACGACAAGTAGTAGGATTACCAGA 1413
|||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1337 TCCTCCTCCACCGCAATACACGGCCGTTCCACCGCCACGACAAGTAGTAGGATTACCAGA 1396
Query 1414 TACATCAGCGTATACTCAGGTGACTTACACTGGAGGAATGGGGAAACAAGTTTATTACAC 1473
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1397 TACATCAGCGTATACTCAGGTGACTTACACCGGAGGAATGGGGAAACAAGTTTATTACAC 1456
Query 1474 GGAGGCTCCACCGCCGCAGTACCATGGAGTTGGCTTACCTGTAACTGGTATGAGTGAATT 1533
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1457 AGAGGCTCCACCGCCGCAGTACCATGGAGTTGGATTACCTGTAACTGGTATGAGTGAATT 1516
Query 1534 GAGAACTGGACCGGACGGGAAGCTTGTTGCTATGAACATGGCACCTAAAGTTTCATCTCA 1593
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1517 GAGAACTGGACCGGACGGGAAGCTTGTTGCCATGAACATGGCACCTAAAGTTTCATCTCA 1576
Query 1594 GAGTTCAGATTCGGCTGTTTGATTGATGAGGTATTTCATATGGTTGAATCAGATTATTGT 1653
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1577 GAGTTCAGATTCGGCTGTTTGATTAATGAGGTATTTCATATGGTTGAATCAGATTATTGT 1636
Query 1654 TAATC--T--ATTACAACAAATTTCATCATCTTTtatatatatatatatatataGTGTAA 1709
||||| | ||||||| | |||||||||||||||||||||||| ||||||
Sbjct 1637 TAATCCATCCATTACAAGATATTTCATCATCTTTTATATATATA----------GTGTAA 1686
Query 1710 TTAAGATCACTTTGGTGTCTGATAAATAATGtttttttctttttCCCTTTATCTACTTGT 1769
|| ||||||||||||||||||||||||||||| ||||| || | | |||||||||||
Sbjct 1687 TTGAGATCACTTTGGTGTCTGATAAATAATGTCTTTTT-TT---C--TGTATCTACTTGT 1740
Query 1770 TTATTTTATCTTATGATGATGTTCTTGATTCTGCAACTTCCATCGCGTTGCTTAAATCCA 1829
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 1741 TTATTTTATCTTATGATGATGTTCTTGATTCTGCAACTTCCATCACTTTGCTTAAATTCA 1800
Query 1830 GTCTATTGTGCATTTGA-TTGCATTT--ATCTGAGAACCTTTTAAGCCATTTTACCTTT 1885
|||| ||| ||||| | |||| ||| |||||||||||||| ||||| ||||||||||
Sbjct 1801 GTCTCGTGTTCATTT-ACTTGCTTTTTTATCTGAGAACCTTTGAAGCCTTTTTACCTTT 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70809765455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5