BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64470.2
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332664 jgi|Araly1|332664|fgenesh1_pm.C_scaffold_8002007 1951 0.0
> Ahg332664 jgi|Araly1|332664|fgenesh1_pm.C_scaffold_8002007
Length=1224
Score = 1951 bits (1056), Expect = 0.0
Identities = 1172/1228 (95%), Gaps = 8/1228 (1%)
Strand=Plus/Plus
Query 2 ATGGAGTTGGGATCCAGACGAATCTACACGACGATGCCGTCGAAGCTCCGAtcttcttct 61
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGTTGGGATCCAGACGAATCTACACGACGATGCCGTCGAAGCTCCGA---TCTTCT 57
Query 62 tcacttcttccacgtattctgctcctttctctcttattactccttttctattccttAA-- 119
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 58 TCACTTCTTCCACGTCTTCTGCTCCTTTCTCTCTTATTACTCCTCTTCTATTCCTTAATT 117
Query 120 -TTCTCCGCCGTCCGATTACTTCAAACATTGCCTCTCCTCCGCCGTGCGATCTCTTCTCC 178
|||||||||| ||||| || |||||| | | ||||||||||||||||||||||||||||
Sbjct 118 CTTCTCCGCCGCCCGATCACATCAAACCTCGTCTCTCCTCCGCCGTGCGATCTCTTCTCC 177
Query 179 GGCAGATGGGTTTTCAATCCAGAAACTCCGAAACCGTTGTACGACGAGACTTGTCCTTTC 238
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGCAAATGGGTCTTCAATCCAGAAACTCCGAAACCGTTGTACGACGAGACTTGTCCTTTC 237
Query 239 CACAGAAACGCTTGGAATTGCTTACGGAACAAGCGAGATAATATGGATGTTATCAATTCA 298
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CACAGAAACGCTTGGAATTGTTTACGGAACAAGCGAGATAACATGGATGTTATCAATTCA 297
Query 299 TGGAGATGGGAGCCCAATGGATGTGGATTGAGTCGAATTGACCCGACCCGGTTTCTAGGG 358
|||||||||| |||| ||| |||||||||||||| ||||||||| | ||||||||||||
Sbjct 298 TGGAGATGGGTTCCCAGTGGCTGTGGATTGAGTCGCATTGACCCGGCTCGGTTTCTAGGG 357
Query 359 ATGATGAGGAACAAGAATGTTGGGTTTGTTGGGGATTCTCTGAATGAGAATTTCTTGGTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGATGAGGAACAAGAATGTTGGGTTTGTTGGGGATTCTCTGAATGAGAATTTCTTGGTT 417
Query 419 TCGTTCTTGTGTATACTTAGAGTGGCTGATCCAAGTGCTATTAAGTGGAAGAAGAAAAAA 478
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 418 TCGTTCTTGTGTATACTTAGAGTGGCTGATCCAAGTGCTGTGAAGTGGAAAAAGAAAAAA 477
Query 479 GCTTGGCGTGGAGCTTACTTCCCTAAGTTCAATGTCACTGTTGCTTATCACAGAGCTGTT 538
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 GCTTGGCGTGGAGCTTACTTCCCTAAGTTCAATGTCACTGTTGCTTATCATAGAGCTGTG 537
Query 539 CTTCTCGCTAAATATCAGTGGCAGGCG-AGATCTTCTGCTGAAGCTAATCAAGACGGAGT 597
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 538 CTTCTCGCTAAATATCAGTGGCAGCCGAAG-TCTTCTGCTGAAGCTAATCAAGACGGAGA 596
Query 598 GAAAGGAACTTATCGAGTTGATGTTGATGTTCCTGCAAATGAGTGGATCAACGTCACTAG 657
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 GAAAGGAACGTATCGAGTTGATGTTGATGTTCCTGCAAATGAGTGGATCAATGTCACTAG 656
Query 658 CTTCTATGATGTTCTCATATTTAACTCTGGCCATTGGTGGGGTTACGATAAGTTTCCTAA 717
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTCTACGATGTTCTCGTTTTTAACTCTGGCCATTGGTGGGGTTACGATAAGTTTCCTAA 716
Query 718 AGAGACACCTCTTGTCTTCTACCGAAAGGGAAAGCCGATAAATCCTCCTCTTGATATATT 777
|||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 717 AGAGTCACCTCTTGTCTTCTATCGAAAGGGAAAGCCGATAAACCCTCCCCTTGATATATT 776
Query 778 ACCAGGATTTGAACTAGTTCTTCAAAATATGGTTTCTTATATCCAAAGAGAAGTCCCTGC 837
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 777 ACAAGGATTTGAAGTAGTTCTTCAACATATGGTTTCTTATATCCAAAGAGAAGTCCCAGC 836
Query 838 GAAGACCCTTAAGTTCTGGCGTTTGCAATCACCAAGGCATTTCTATGGTGGTGATTGGAA 897
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 837 GAAGACCCTTAAGTTCTGGCGTTTGCAATCACCTAGGCATTTCTATGGCGGTGATTGGAA 896
Query 898 CCAGAATGGAAGTTGTTTGCTCGATAAGCCACTCGAAGAAAACCAGCTTGACTTGTGGTT 957
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CCAGAACGGAAGTTGTTTGCTCGATAAGCCACTCGAAGAAAACCAGCTTGACTTGTGGTT 956
Query 958 TGATCCCAGGAACAATGGAGTGAACAAAGAAGCAAGAAAGATTAACCAAATCATCAAGAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGATCCCAGGAACAATGGAGTGAACAAAGAAGCAAGAAAGATTAACCAAATCATCAAGAA 1016
Query 1018 TGAGTTGCAAACGACAAAGATCAAGTTACTTGATCTGACCCATCTAAGCGAATTCAGAGC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 TGAGTTGCAAACGACAAAGATCAAATTACTTGATCTGACCCATCTAAGCGAATTCAGAGC 1076
Query 1078 AGATGCCCACCCAGCGATCTGGTTAGGGAAGCAGGACGCGGTGGCAATATGGGGACAAGA 1137
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGACGCCCACCCAGCTATCTGGTTAGGGAAGCAGGACGCGGTGGCAATATGGGGACAAGA 1136
Query 1138 CTGTATGCATTGGTGCCTACCCGGTGTTCCTGACACATGGGTCGATATATTAGCGGAACT 1197
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1137 CTGTATGCATTGGTGCCTACCCGGTGTTCCCGACACATGGGTCGATATCTTAGCGGAACT 1196
Query 1198 CATTCTCACTAACTTAAAAACAGAGTGA 1225
||||||||||||||| ||||||||||||
Sbjct 1197 CATTCTCACTAACTTGAAAACAGAGTGA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5