BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64480.1

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496659 jgi|Araly1|496659|fgenesh2_kg.8__2475__AT5G64480.1         835    0.0  


> Ahg496659 jgi|Araly1|496659|fgenesh2_kg.8__2475__AT5G64480.1
Length=582

 Score =  835 bits (452),  Expect = 0.0
 Identities = 550/595 (92%), Gaps = 15/595 (3%)
 Strand=Plus/Plus

Query  30   agagaTGTCGGTGAGATTACTTCATCTTCTTCCCCAAAACAATTCCTTTTCTCGGAATCT  89
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGAGATGTCGGTAAGATTACTTCATCTTCTTCCCCAAAACAATTCCTTTTCTCGGAATCT  60

Query  90   CAAATTTCACCATCTGTTGACCCGACCCGTAACCCGAATCCAGTGCATAAGGAGAGACGA  149
            |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct  61   CAAATTTCACCATCTGTTGACCCGACCCGTCACCCGAATTCAGTGCATAAAGAGAGACGA  120

Query  150  GGAAGACGATGACATCATCA-ACAAGATGAGGATTAGGAGGCCGAAGAGGAAGAAGAAGA  208
             ||||||||||||||||||| | || ||||||||||||| ||| |||| |||||||||||
Sbjct  121  CGAAGACGATGACATCATCAGA-AACATGAGGATTAGGAAGCCCAAGAAGAAGAAGAAGA  179

Query  209  TTATGACCGATTCGGAGCTAGCGACAGATTTGGCTAGAGAAATCGGGAAAGCGAACACAG  268
            ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  180  TTATGACCGATTCGGAGCTGGCGAAAGATTTGGCTAGAGAAATCGGGAAAGCGAACACAG  239

Query  269  TCGCGGAGCAGAGAAGAGAAGCGATGAAGAAGAGCGGTGAGATTCTGTGGGCAGAGTTTT  328
            ||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  240  TCGCGGAACAGAGACGAGAAGCGATGAAGAAGAGCGGTGAGATTCTATGGGGAGAGTTTT  299

Query  329  GTAGGCATATGGATTTGAAAGAAGATGAGATGAAGATAAAATGGAACAAGATTGGAGAAG  388
            ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct  300  GTAGGCATATGGAATTGAAAGAAGATGAGATGAAGATTAAATGGAGCAAGATTGGAGAAG  359

Query  389  AAGAGAAATTGGTTCTGGTTAGAGAGTTTGTTGATGAATGGGCTGGTGATTTTCAACCTT  448
            ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||
Sbjct  360  AAGAGAAATTGGTTCTGGTTAGAAAGTTTGTGGATGAATGGGCTGGAGATTTTCAGCCTT  419

Query  449  TATCTATTACATCTGTTAAAGAAATGGTTGACCAAGAGTGTTTAGATTCTGACAAAACAA  508
            ||||| ||| |||||| |||||||||||||| ||||||||||||||||||  | |     
Sbjct  420  TATCTGTTAGATCTGTGAAAGAAATGGTTGAACAAGAGTGTTTAGATTCTT-CTA-----  473

Query  509  TCGAATCTTCTTCTTCTTCGTCTATGTCTTCGTTTTCTGGCTTGTTTCCTGGATTGAAGA  568
            | |||||||||||||||      ||||||||||||||||| |||||||||||||||||||
Sbjct  474  TGGAATCTTCTTCTTCT------ATGTCTTCGTTTTCTGGATTGTTTCCTGGATTGAAGA  527

Query  569  GAATCATTGGGTTTGAGTAGAAAGAATCTCCAATTTTCTTTTATAA-CATTGCAA  622
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  528  GAATCATTGGGTTTGAGTAGAAAGAATCTCCAATTTTCTTTTATAATCATTGCAA  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27791606493


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5