BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64490.1

Length=999
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951280 jgi|Araly1|951280|scaffold_803167.1                        226    3e-58


> Ahg951280 jgi|Araly1|951280|scaffold_803167.1
Length=1289

 Score =  226 bits (122),  Expect = 3e-58
 Identities = 151/165 (92%), Gaps = 2/165 (1%)
 Strand=Plus/Plus

Query  692   ACTTTGGAATTCGCGAAAGAACGTAGGGTTGATTTGTTTCGTGATCTCGTCGAGAAGCTG  751
             |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  1123  ACTTTGGAATTCGCGAAAGAACGTAGGGTTGATTTGTTTCGTGAGCTCGTTGAGAAGCTG  1182

Query  752   ACGCCTTTGCTTGATCTATTGCGTGGATCTCAAGGAAATAA-CATTGCCGCCATCATCGA  810
             | ||||||| ||||||| |||||||||| |||||||| ||| |||||| |||||||||||
Sbjct  1183  AAGCCTTTGATTGATCTCTTGCGTGGATATCAAGGAA-TAAACATTGCGGCCATCATCGA  1241

Query  811   CTTAGACAAAAGTGAGGTTAAGGATTCAAGTCTTTATGCTGTTGC  855
             ||||||||||| ||||| |  ||||| ||||||||||||||||||
Sbjct  1242  CTTAGACAAAATTGAGGGTGTGGATTAAAGTCTTTATGCTGTTGC  1286



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37131721158


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5