BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64500.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951281 jgi|Araly1|951281|scaffold_803168.1 2475 0.0
> Ahg951281 jgi|Araly1|951281|scaffold_803168.1
Length=1495
Score = 2475 bits (1340), Expect = 0.0
Identities = 1446/1498 (97%), Gaps = 3/1498 (0%)
Strand=Plus/Plus
Query 109 TCTCAGAAAACCGAGCTTGCCATGGATGTTGACGGAGAAGGTGATCGTGGTCAAAACCCT 168
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCAG-AAACCGAGCTTGCCATGGATGTTGACGGAGAAGGTGATCGTGGTCAAAACCCT 59
Query 169 AGAATTATGGAGAGGGACTCAGATTCTATCAAAGATCCGATCTCAGAGCCTTCATGGTTT 228
||||||||||||||||| |||||||| | |||||||| |||| |||||||||||||||||
Sbjct 60 AGAATTATGGAGAGGGATTCAGATTCGACCAAAGATCAGATCACAGAGCCTTCATGGTTT 119
Query 229 ACCCCCAAAAAGCTTCTCTTTGTGTTTTGTGTTGTCAACTTAATCAATTATATAGATCGA 288
||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 120 ACCCCAAAAAAGCTTCTCTTTGTGTTTTGTGTTGTGAACTTGATAAATTATATAGATCGA 179
Query 289 GGAGCTATAGCAAGTAATGGTATCAATGGGAGTCGTGGTTCTTGCACTTCGAGTGGTACA 348
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 GGAGCTATAGCAAGTAATGGTATCAATGGGAGTCGTGGTACTTGCACTTCGAGTGGTACA 239
Query 349 TGTTCATCTGGCAGCGGAATACAGGGAGATTTCAACTTGAGCAATTTTGAAGATGGAGTT 408
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TGTTCAGCTGGCAGCGGAATACAGGGGGATTTCAACTTGAGCAATTTTGAAGATGGAGTT 299
Query 409 CTGTCATCTGCTTTCATGGTTGGGCTTCTTGTTGCCTCTCCTATATTTGCTTCCTTAGCT 468
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 300 CTGTCTTCTGCTTTCATGGTTGGGCTTCTTGTAGCCTCTCCTATATTTGCTTCATTAGCA 359
Query 469 AAGAGTGTTAATCCGTTTAGACTTATCGGAGTTGGGTTGTCAATCTGGACTCTCGCTGTG 528
|||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 360 AAGAGTGTTAATCCGTTTAGACTTATTGGAGTTGGATTGTCAATCTGGACTTTCGCTGTG 419
Query 529 ATTGGCTGCGGTCTTTCGTTTGATTTTTGGTCCATCACAATCTGTCGCATGTTTGTTGGT 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 ATTGGCTGCGGTCTTTCGTTTGATTTTTGGTCCATCACTATCTGTCGCATGTTTGTTGGT 479
Query 589 GTTGGTGAGGCATCATTTGTAAGTCTTGCTGCCCCATTCATCGACGATAATGCCCCACAT 648
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 480 GTTGGTGAGGCATCATTTGTAAGTCTTGCTGCCCCATTTATCGACGATAATGCCCCACGT 539
Query 649 GATCAGAAATCAGCGTGGCTTGCTGTATTCTACATGTGCATTCCGACAGGCTATGCTTTT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATCAGAAATCAGCGTGGCTTGCTGTATTCTACATGTGCATTCCGACAGGCTATGCTTTT 599
Query 709 GGCTACGTATATGGTGGAGTGGTGGGGAGTGTCCTTCCTTGGCGTGCAGCATTTTGGGGA 768
||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 600 GGCTATGTATATGGTGGAGTGATGGGGAGTGTCCTTCCTTGGCGGGCTGCATTTTGGGGA 659
Query 769 GAAGCAATACTTATGCTTCCTTTTGCTGTTCTAGGTTTTGTCATCAAACCCTTGCATCTG 828
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 660 GAAGCAATACTTATGCTTCCTTTTGCTGTTCTAGGTTTTGTTATCAAACCCTTGCATTTG 719
Query 829 AAAGGTTTTGCTCCAGATGATACAGGAAAGCCCCGGACAGATAACTTAAACGTTTTGCCA 888
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 AAAGGTTTCGCTCCAGATGATACAGGAAAAACCCGGACAGATAACTTAAACGTTTTGCCA 779
Query 889 GTTGGTTATGGGTTCTCAGCTGTTATGAAAGATTTGAAATTGCTTTTGGTAGATAAGGTT 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTGGTTATGGGTTCTCAGCTGTTATGAAAGATTTGAAATTGCTTTTGGTAGATAAGGTT 839
Query 949 TATGTTACAAACATTCTTGGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATAT 1008
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 TATGTTACAAACATTCTTGGGTATATTGCTTACAACTTTGTTTTAGGCGCATATTCATAT 899
Query 1009 TGGGGACCAAAGGCTGGTTATAACATATACAAGATGGAAAACGCTGATATGATATTTGGA 1068
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGGGGCCAAAGGCTGGCTATAACATATACAAGATGGAAAACGCTGATATGATATTTGGA 959
Query 1069 GGGGTCACAGTTGTATGCGGAATTGTTGGCACATTATCAGGAGGAGTGATTCTAGATTAC 1128
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 960 GGGGTCACAGTTATATGCGGAATCGTTGGCACACTATCAGGAGGAGTGATTCTAGATTAC 1019
Query 1129 ATGGATGCCACAATTTCAAATGCTTTTAAGGTTCTTTCAGTTTCAACGTTTATAGGAGCA 1188
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGGATGCTACAATTTCAAATGCTTTTAAGGTTCTTTCAGTTTCAACGTTTATAGGAGCA 1079
Query 1189 ATATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTTTAGCTCTTTTTGCT 1248
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 TTATTTTGCTTTGCTGCTTTCTGTTTCAAGAGCATGTATGCATTTCTAGCTCTTTTTGCT 1139
Query 1249 GTTGGTGAACTTCTTGTCTTTGCCACACAGGGTCCTGTGAATTTCATAGTTCTCCATTGT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTGGTGAACTTCTTGTCTTTGCCACACAGGGTCCTGTGAATTTCATAGTTCTCCATTGT 1199
Query 1309 GTCAAACCAAGTCTGAGACCACTTGCAATGGCGATGTCTACTGTCTCTATCCATATCTTT 1368
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1200 GTCAAACCAAGTTTGAGACCACTTGCAATGGCGATGTCTACTGTATCCATCCATATCTTT 1259
Query 1369 GGAGATGTACCTTCCTCACCACTCGTTGGAGTTCTTCAGGACTACGTGAACAATTGGAGA 1428
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGAGATGTACCTTCCTCACCACTTGTTGGAGTTCTTCAGGACTACGTGAACAATTGGAGA 1319
Query 1429 GTGACTTCTCTTGTTCTTACATTCGTTCTCTTTCCAGCTGCTGCAATTTGGTCCATAGGG 1488
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 GTGACTTCTCTTGTTCTTACATTCGTTCTCTTCCCAGCTGCTGCAATTTGGTCCATAGGG 1379
Query 1489 ATTTTCCTGAATAGTGTGGATCGATATAACGAAGATTCCGAGCCTGATGCAGTAACCAGA 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 ATTTTCCTGAATAGTGTGGATCGATATAACGAAGATTCCGAGCCTGATGCAGTGACCAGA 1439
Query 1549 GAATCAACCGCTGCGCCTCTTCTCCAGGAAGCATGAGACaaaaaaaCTCAAAAGGTCA 1606
|||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 1440 GAATCAACCGCTGCGCCTCTTCTCCAGGAAGCATGAGACAAAAAC-CTCCAA-GGTCA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5