BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64510.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994 1947 0.0
> Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994
Length=1278
Score = 1947 bits (1054), Expect = 0.0
Identities = 1203/1277 (94%), Gaps = 2/1277 (0%)
Strand=Plus/Plus
Query 188 GATGGGTCACAGAGTATTGGTTTATGTTGGAGCTCTGTTTCTGATTTTATTCACGATTTT 247
|||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 3 GATGGGTCACAGGGTATTGGTTTGTGTCGGAGCTCTGTTTCTAATTTTATTCACGATTTT 62
Query 248 TCCATCTTCTAGTGCTTTAATTTCGTCTCCTGATGCTAATCCTCCTTACCCTAAAGCTAT 307
|||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 TCCATCGTCTAGAGCCTTGATTTCGTCTCCTGAGGCTAATCCTCCTTACCCTAAAGCTAT 122
Query 308 CTCCGATTTGAAGGAATCAATTGTGAAGGGACTTGGATTCCAATCCGAGGAAGTCAAGGT 367
||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 CTCGGATTTGAAGGAAGCAATTGTGAAGGGACTTGGATTCCAATCTGAGGAAGTCAAGGT 182
Query 368 TTCTGGGTTTGATATAAGGGATGCATTGGTAGGACATTCTGTTTCATACGAATTTGATTT 427
|||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 183 TTCTGGTTTTGATGTAAGGGATGCATTGGTAGGACATTCTGTTTCTTATGAATTTGATTT 242
Query 428 AGAAATCGACAATAAAGTTCTCCCATTTAAGCTTCTTGAAGATGTGAACCGATGGGAATA 487
|||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 243 AGAAATCGACAACAAAGTGCTTCCATTTAAGCTTCTTGAGGATGTGAACCGATGGGAATA 302
Query 488 CGTTGATCTCCCAATTTTCCAAGTAGAACAACCCTCTGAG-AATGGTTTGGTTCCTATGA 546
||| |||||||| |||||||||||||||||||| | || |||||||||||||| ||||
Sbjct 303 CGTAGATCTCCCTATTTTCCAAGTAGAACAACCAAAT-AGAAATGGTTTGGTTCCCATGA 361
Query 547 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTTCTG 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTGCTG 421
Query 607 GTCCTATGGAACTTTGGATCCAAGATGCTAATAATATGCGCCTTTCTTTACCATATGATG 666
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 422 GTCCTATGGAACTTTGGATCCAAGATGCTAACAATATGCGCCTTTCTTTACCATATGATG 481
Query 667 TGGATGCTGGTGTTTTGAAGAAAGTGATATTAGCAGATGGTGCTGTTGTAACAGTTAAAG 726
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 482 TGGATGCTGGTGTTTTGAAGAAAGTGATATTATCAGATGGTTCTGTTGTAACAGTTAAAG 541
Query 727 GAGCTAGATCTGTTAGCTTGCGTCATCCCATTGATTTGCCACTTCCATTGAATCAGAGTT 786
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 542 GAGCTAGATCAGTTAGTTTGCGTCATCCCATTGATTTGCCACTTCCATTGAACCAAAGCT 601
Query 787 CCAATGAGTTTGCTTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCGACTG 846
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 602 CCAATGAATTTGCCTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCAACTG 661
Query 847 ATCAAGAAAGTCCAGTTCTTTCGCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 906
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 662 ATCAAGAAAGTCCACTTCTTTCTCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 721
Query 907 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAATTAT 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 722 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAACTAT 781
Query 967 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACCATTGGTGCCAACGCTATGACTACTG 1026
|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 782 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACGATTGGCGCCAGCGCTATGACTACCG 841
Query 1027 TTCTTACCCCAAGAGAGTTTACAACCATGTGGCCAATCACTTCAATCAATGGCTCAAATG 1086
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 842 TTCTTACCCCAAGAGAGTTTACAACAATGTGGCCAATTACTTCAATCAATGGCTCAAATG 901
Query 1087 CTAACTTACTTGGCTTTGAGAAACTATTGACCTCTGTTTTGGGTCCGAAAGCTCAGGAGA 1146
|||||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct 902 CTAACTTAATCGGCTTTGAGAAGCTACTGACCTCTGTTTTGGGTCCCAAAGCTCAGGAAA 961
Query 1147 AAGGTTCCTTTAAGGTGTTAAAAGCGAAAGTCGCTGCTCAAACCTTTATGAAGATTGGTT 1206
||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct 962 AAGGTTCCTTTAAGGTGTTGAAAGCGAATGTCGCGGCTCAAACGTTTATGAAGATTGGTT 1021
Query 1207 TTGGCATAGAAAAGAAGCTCAAGGAAGCAGATGTTGAAGGTTTAAGCTTTCCAGAGTGGC 1266
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1022 TTGGTGTAGAAAAGAAGCTCAAGGAAGCAGATCTTGAAGGTTTAAGCTTTCCAGAGTGGC 1081
Query 1267 GAACAAAGCCTGAGACAATGAGAATGCATTTTGAGGTTCTTGCTAAAGTTGATGGTGAGA 1326
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1082 GAACAAAGCCTGAGACAATGAGAATGCATTTCGAGGTTCTTGCTAAAGTTGATGGAGAGA 1141
Query 1327 ATGTTATCCCGGAGAACGTAATGCGAGTTGATCCAATCCCACTGGAGGACACGATAGCGC 1386
| |||||||| |||||| |||||||||||||||| || ||| ||||||||||||| ||||
Sbjct 1142 AAGTTATCCCAGAGAACATAATGCGAGTTGATCCGATACCATTGGAGGACACGATTGCGC 1201
Query 1387 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTGAGTCTCCTCCAA 1446
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1202 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTCAGTCTCCTCCAA 1261
Query 1447 GCCCTTTTACCTTGTAA 1463
||||||| || ||||||
Sbjct 1262 GCCCTTTCACTTTGTAA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5