BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64530.1

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496665 jgi|Araly1|496665|fgenesh2_kg.8__2481__AT5G64530.1        1177    0.0  


> Ahg496665 jgi|Araly1|496665|fgenesh2_kg.8__2481__AT5G64530.1
Length=873

 Score = 1177 bits (637),  Expect = 0.0
 Identities = 691/716 (97%), Gaps = 8/716 (1%)
 Strand=Plus/Plus

Query  1    ACCTCAATCTCTTTCACACACTTCCTCTGGCTCCACATCATTCCTCTCTATATAATCTTC  60
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1    ACCTCAATCTCTTTCACACACTTCCTCTGGCTCCACATCA-TCCTCTCTATATAATCTTC  59

Query  61   TTCTacacacacacacacacGCAACCATATACGTACATGTGAAGTAGTGAGATCAATATC  120
            ||||    |||||  |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct  60   TTCT----ACACATTCACACGCAACCACATATGTACATGTGAAGTAGTGAGATCAATATC  115

Query  121  GTTAGCAATGAATCTACCACCGGGATTTAGGTTTTTTCCGACCGATGAAGAGCTCGTCGT  180
            |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  116  GTTATCAATGAATCTACCACCGGGATTTAGGTTTTTTCCGACCGACGAAGAGCTCGTCGT  175

Query  181  TCACTTCCTCCACCGGAAAGCTTCCCTCTTGCCTTGTCACCCTGATGTCATCCCCGACCT  240
            |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  176  TCACTTTCTCCACCGGAAAGCTTCCCTCTTGCCTTGTCACCCTGACGTCATTCCCGACCT  235

Query  241  TGATCTTTACCATTACGATCCTTGGGACCTTCCCGGGAAAGCTTTGGGAGAAGGGAGGCA  300
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  236  CGATCTTTACCATTACGATCCTTGGGACCTTCCAGGGAAAGCTTTGGGAGAAGGGAGGCA  295

Query  301  ATGGTACTTCTATAGTAGAAAGACACAAGAGAGAGTGACAAGCAATGGGTATTGGGGATC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  ATGGTACTTCTATAGTAGAAAGACACAAGAGAGAGTGACAAGCAATGGGTATTGGGGATC  355

Query  361  AATGGGAATGGACGAGCCAATCTACACAAGCTCCACACACAAGAAAGTGGGAATCAAAAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  356  AATGGGAATGGACGAGCCAATCTACACAAGCTCCACACACAAGAAAGTGGGCATCAAAAA  415

Query  421  GTATCTAACTTTCTATCTCGGAGATTCTCAGACTAATTGGATCATGCAAGAATATTCCCT  480
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  416  GTATCTAACTTTCTATCTCGGAGATTCTCAGACTAACTGGATCATGCAAGAATATTCCCT  475

Query  481  CCCGGATTCCTCTTCTTCATCTAGTCGATCTTCTAAGAGATCAAGCCGTGCT--T-CTAG  537
            ||| |||||||||||||||||||||||||||||||||||||||| |||||||  | ||||
Sbjct  476  CCCAGATTCCTCTTCTTCATCTAGTCGATCTTCTAAGAGATCAAACCGTGCTGCTTCTAG  535

Query  538  TTCTAGTCACAAACCCGATTATAGCAAGTGGGTGATATGCAGAGTGTATGAGCAAAATTG  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536  TTCTAGTCACAAACCCGATTATAGCAAGTGGGTGATATGCAGAGTGTATGAGCAAAATTG  595

Query  598  CAGTGAGGAGGAAGACGATGATGGGACAGAACTCTCATGTTTGGATGAAGTGTTTTTGTC  657
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  596  CAGTGAGGAAGAAGACGATGATGGGACAGAACTCTCATGCTTGGATGAAGTGTTTTTGTC  655

Query  658  TTTAGATGATCTTGACGAAGTAAGCTTACCGTAATAAAGACAGAAGCACCCAAGAA  713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  656  TTTAGATGATCTTGACGAAGTAAGCTTACCGTAATAAAGACAGAAGCACCCAAGAA  711



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34501239885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5