BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64560.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496668 jgi|Araly1|496668|fgenesh2_kg.8__2484__AT5G64560.1 2457 0.0
> Ahg496668 jgi|Araly1|496668|fgenesh2_kg.8__2484__AT5G64560.1
Length=1586
Score = 2457 bits (1330), Expect = 0.0
Identities = 1513/1598 (95%), Gaps = 25/1598 (2%)
Strand=Plus/Plus
Query 3 TTTCCGAAAATCTTTTTAATGAAAAAAGAGCAGACAGGACGAGAATTCGCTTTTCTGAAT 62
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1 TTTCCGAAAATCTTTTTAATGAAAAAAGAGCAGTCAGGACGAGAATTCGCTTTCCTGAAT 60
Query 63 CCTTTAGAGTATTGTTTTCTCCGTCGAATTCGCATGAACACTTGAGCTCAACAAGACGGC 122
|| ||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 61 CCATTAGAGTGTTGTTATCTCCGTCGAAATCGCATGAACACTTGAGCTCAAAAAGACGGC 120
Query 123 GTGGAAGTGGACGGTGAGGTAGttttttttagtttttGAAAGACATGGCGCAAAACGGGT 182
||||||||||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct 121 GTGGAAGTGGACGGTGAGGTA--ATTTTTT-G-TTGGGAAAGACATGGCGCAAAACGGGT 176
Query 183 ACT-TGGTTCCAGCGGATCCTTCGGCGGTTGTGACGGTGAAGAAGAAAACGCCACAAGCG 241
| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 A-TGTGGTTCCGGCGGATCCTTCGGCGGTAGTGACGGTGAAGAAGAAAACGCCACAAGCG 235
Query 242 TC---G---TGGGCTCTTATTGACGCGACGGGACAGAGTGAGCCACTCGATGTTGATAAG 295
|| | |||||| |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 236 TCGAAGAATTGGGCTATTATTGACGCGACGGGACAGAGTGAGACGCTCGATGTCGATAAG 295
Query 296 TATGAGATCATGCACCGTGTCCAGATCCACGCTCGCGATCTCCGGATTCTAGACCCCAAT 355
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 296 TATGCTATCATGCACCGTGTCCAGATCCACGCTCGCGATCTTCGGATTCTCGACCCCAAT 355
Query 356 TTATCTTACCCTTCCACTATTCTTGGCCGAGAGAGAGCCATTGTTCTCAATTTGGAGCAT 415
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 356 TTATCTTACCCTTCCACTATTCTTGGCCGAGAGAGAGCCATTGTGCTCAATTTGGAGCAT 415
Query 416 ATCAAGGCTATTATCACTTCCGAAGAGGTTTTGCTTCGGGATCCGTCTGATGAAAATGTT 475
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCAAGGCGATTATCACTTCCGAAGAGGTTTTGCTTCGGGATCCGTCTGATGAAAATGTT 475
Query 476 ATTCCAGTTGTGGAGGAGCTTCGAAGACGCTTACCTGTTGGAAATGCATCACACAATGGT 535
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
Sbjct 476 ATTCCAGTTGTGGAGGAGCTTCGAAGACGCTTACCCGTTGGAAATGCAGCACACCA---T 532
Query 536 GGTCAAGGAGACGGGAAAGAGATCGCAGGTGCTCAAAACGACGGTGATACTGGTGACGAA 595
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 533 GGTCAAGGAGACGGGAAAGAGATCTCAGGTGCTCAAAACGATGGTGATACTGGTGATGAA 592
Query 596 GATGAATCCCCATTTGAATTTCGGGCGCTGGAAGTAGCTTTGGAAGCAATCTGTAGCTTC 655
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 GATGAATCCCCATTCGAATTTCGGGCGCTGGAAGTAGCTTTGGAAGCACTCTGTAGCTTC 652
Query 656 TTAGCTGCAAGGACAGCAGAATTAGAAACAGCTGCTTATCCTGCTTTGGATGAGCTTACC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTAGCTGCAAGGACAGCAGAATTAGAAACAGCTGCTTATCCTGCTTTGGATGAGCTTACC 712
Query 716 TCAAAGATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGG 775
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 713 TCAAAGATTAGTAGCCGTAATTTGGATAGAGTTCGAAAATTGAAGAGTGCCATGACTCGG 772
Query 776 TTGACAGCTCGGGTTCAAAAGGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGAT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGACAGCTCGGGTTCAAAAGGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGAT 832
Query 836 GATATGGCAGATCTTTACCTTTCAAGGAAACTTTCAAGTGCTTCCTCACCGATTAGTAGT 895
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 GATATGGCGGATCTTTACCTTTCAAGGAAACTTTCTAGTGCTTCCTCACCGATTAGTAGT 892
Query 896 ATTGGTGAACCAAATTGGTATACTACTTCCCCAACAATAGGCTCTAAGATTTCAAGAGCA 955
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 893 GTTGGTGAACCAAATTGGTATGCTACTTCCCCAACAATAGGTTCTAAGATTTCAAGAGCA 952
Query 956 AGTAGAGCGAGTTTAGCCACAGTTCATGGGGATGAGAATGATGTTGAAGAACTTGAAATG 1015
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 953 AGTAGAGCGAGTTTAGCCACAGTTCGTGGGGATGAAAATGATGTTGAAGAACTTGAAATG 1012
Query 1016 TTACTCGAGGCATACTTCATGCAGATCGACAGCACTTTGAACAGATTAACAACACTACGT 1075
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1013 TTGCTCGAGGCATACTTCATGCAGATCGACAGCACTTTGAACAGATTGACAACACTACGT 1072
Query 1076 GAGTATATTGATGACACAGAGGACTACATTAACATCCAGCTTGACAATCATCGGAATCAG 1135
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAGTACATTGATGACACAGAGGACTACATTAACATCCAGCTTGACAATCATCGGAATCAG 1132
Query 1136 CTTATTCAGTTGGAGCTAGTGTTAAGTTCTGGAACAGTTTGCTTATCGATGTACTCTCTT 1195
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1133 CTTATTCAGTTGGAGCTTGTGTTAAGTTCTGGAACCGTTTGCTTATCAATGTACTCTCTT 1192
Query 1196 GTCGCTGGAATTTTCGGGATGAACATTCCATACACATGGAACGACGGTCATGGATACATG 1255
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1193 GTCGCTGGAATTTTTGGGATGAACATTCCATACACATGGAACGACAATCATGGATACATG 1252
Query 1256 TTCAAATACGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG 1315
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCAAATATGTCGTGAGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG 1312
Query 1316 TCGTACGCTAGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGGGTTAGATGGAG 1375
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1313 TCGTACGCTCGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGGGT-AGAGGGAG 1371
Query 1376 AGATTGTGAAGGGG-CATTGGGCAGAT-CTTGTTTTCGATTATTATACTTGTGGTCGTTC 1433
|||||||||||||| ||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 1372 AGATTGTGAAGGGGGCAT-GGGCAGATTCTTGTTTTCGATTATTGTACTTGTGGTCGTTC 1430
Query 1434 TGAGTTTTGAACGAGCTTCACAAT-TATTTTAGTTGTCGCATCATAAAATTTAATCAAAC 1492
||||||||||||| |||||||||| | ||||| |||||||||||||||||| ||||||||
Sbjct 1431 TGAGTTTTGAACGGGCTTCACAATCT-TTTTACTTGTCGCATCATAAAATT-AATCAAAC 1488
Query 1493 ATATTGAAAAAAGCAGAAGCATTGT-G--ACTTGTAATTGCAAAGATAAGCTCTACCATC 1549
|||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1489 ATATCGAAAAGAGCAGAAGCATTGTTGTGACTTGTAATTGCAAAGATAAGCTCTACCATC 1548
Query 1550 GATTCCTTACAATTAGAGCATAGAAATCAAATTTAGGA 1587
|| ||||||||||||||||||| |||||| ||||||||
Sbjct 1549 GAATCCTTACAATTAGAGCATATAAATCATATTTAGGA 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5