BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64580.1
Length=2823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496671 jgi|Araly1|496671|fgenesh2_kg.8__2487__AT5G64580.1 4449 0.0
> Ahg496671 jgi|Araly1|496671|fgenesh2_kg.8__2487__AT5G64580.1
Length=2743
Score = 4449 bits (2409), Expect = 0.0
Identities = 2568/2647 (97%), Gaps = 2/2647 (0%)
Strand=Plus/Plus
Query 25 CGAGGGGAAATTTTTCCCAGCTCTAATCTAATGACTGAACAATGACGTTTTATATCTCGA 84
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2 CGAGGGGAAATTTTTCTCAGCTCTAATCTGATGATTGAACAATGACGTTTTATATCTCGA 61
Query 85 GCTCGTTAACTCCAACCCATTTCTCGAAACCCTTAAACCCTTCTAATACCCTCTTCCCCA 144
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTTCGTTAACTCTAACCCATTTCTCGAAACCCTTAAACCCTTCTAATACCCTCTTCCCCA 121
Query 145 GTCAATTTCGAGGTTCTCTGTCTAGTTTCGTCCGTCGAAGAAAACCAACGGAAGCTAAAT 204
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 122 TTCAATTTCGAGGTTCTCTGTCTAGTTTCGTTCGTCGTAGAAAACCAACGGAAGCTAAAT 181
Query 205 TAAGCTCCAAATTCAATCTTTTTCCTTCACGAAGAAATGGTTTGATTACTTGTTGCAGTA 264
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 182 TAAGCTCCAAATTCAATATTTTTCCTTCACGAAGAAATGGTCTGATTACTTGTTGCAGTA 241
Query 265 CATCGAGCTTTGAGTCTACTGAGTCTTCAGTTTCACAGGAAGAAGATGCTGAGTCCAATC 324
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 242 CATCGAGTTTTGAGTCTACTGAGTCTTCAGTTCCACAGGAAGAAGATGCTGAGTCCAATC 301
Query 325 GTCTATTTGAGAAG-TTACGAGAAACTGAAAGAGAACGACTTAGCAACATGGAAGAGCTC 383
||||||||||| || ||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 302 GTCTATTTGAG-AGATTAAGAGAAGCTGAAAGAGAACGGCTTAGCAACATGGAAGAGCTC 360
Query 384 GAGAGAAAGGCTAATGTACAATTAGAAAGGCAGCTTGTTATGGCATCAGATTGGAGTAGA 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GAGAGAAAGGCTAATGTACAATTAGAAAGGCAGCTTGTTATGGCTTCAGATTGGAGTAGA 420
Query 444 ACATTGTTAACCATGCGTGGCAAGTTAAAAGGAACAGAATGGGATCCTGAAACCTCTCAC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACATTGTTAACCATGCGTGGCAAGTTAAAAGGAACAGAATGGGATCCTGAAACCTCTCAC 480
Query 504 CGTATCAATTTTAGTGATTTTATGAAGCTCTTAGATTCCAACAGTGTTCAATACATGGAA 563
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CGGATCAATTTTAGTGATTTTATGAAGCTCTTAGATTCCAACAGTGTTCAGTACATGGAA 540
Query 564 TATTCAAATTACGGACAGACGATATCAGTGATATTGCCTTATTATAAAGATGGGGAGCCC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATTCAAATTACGGACAGACGATATCAGTGATATTGCCTTATTATAAAGATGGGGAGCCC 600
Query 624 CTAGGAGAAGAAGAAGATTCGAAAAAGGAGATAATTTTCCGTCGTCACATTGTGGACCGA 683
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAGGAGAAGAAGAAAACTCGAAAAAGGAGATAATTTTCCGTCGTCACATTGTGGACCGA 660
Query 684 ATGCCAATTGATGGTTGGAATGATGTATGGAAGAAGTTGCATCAGCAGATAGTAAACGTA 743
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 661 ATGCCAATTGATGGTTGGAATGATGTATGGAAGAAGTTGCATCAGCAAATAGTCAACGTA 720
Query 744 GAGGTTTTCAATGTAGATGTGGTTCCAGCTGAAGTCTATACTACAGTTGCCACTTTTGTG 803
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGGTTTTTAATGTAGATGTGGTTCCAGCTGAAGTCTATACTACAGTTGCCACTTTTGTG 780
Query 804 GTTTGGTCTATGAGACTTGCCCTCTTTGTTTCGCTTTATGTTTGGATCGACAGTATCACG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTTGGTCTATGAGACTTGCCCTCTTTGTTTCGCTTTATGTTTGGATCGACAGTATCACG 840
Query 864 AGGCCAATCTATGCCAAACTAATCCCTTGTGATCTCGGAACCCCTACCAAAAAGATAAGG 923
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGGCCAATCTATGCCAAGTTAATCCCTTGTGATCTCGGAACCCCTACCAAAAAGATAAGG 900
Query 924 CAGCCCCTCAAGCGCCAAGCACTCGGTTCCCTAGGCAAGAGTCGGGCAAAATTTATATCA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAGCCCCTCAAGCGCCAAGCACTCGGTTCCCTAGGCAAGAGTCGGGCAAAATTTATATCA 960
Query 984 GCAGAGGAGAAAACTGGTGTTACTTTTGATGATTTTGCGGGTCAGGAGTATATAAAGAGG 1043
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCAGAGGAGAAAACTGGTGTAACTTTTGATGATTTTGCGGGTCAGGAGTATATAAAGAGG 1020
Query 1044 GAATTACAAGAAATTGTGCGAATTTTAAAGAATGATGAGGAATTTCAGAATAAAGGCATT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAATTACAAGAAATTGTGCGAATTTTAAAGAATGATGAGGAATTTCAGAATAAAGGCATT 1080
Query 1104 TATTGTCCGAAAGGTGTTCTGCTTCATGGACCTCCCGGAACGGGGAAAACTTTGTTAGCC 1163
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1081 TATTGTCCGAAAGGTGTTCTGCTTCATGGACCTCCCGGGACGGGGAAAACTCTGTTGGCC 1140
Query 1164 AAAGCTATTGCTGGAGAAGCTGGTTTACCTTTCTTCGCGGCAAATGGAACCGACTTTGTT 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGCTATTGCTGGAGAAGCTGGTTTACCTTTCTTCGCGGCAAATGGAACCGACTTTGTT 1200
Query 1224 GAGATGTTTGTAGGAGTGGCTGCATCTCGTGTTAAAGATCTTTTTGCTAGCTCTCGGTCA 1283
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 GAGATGTTTGTAGGAGTGGCTGCATCTCGTGTTAAAGATCTTTTCGCTAGCTCTCGGTCA 1260
Query 1284 TATGCGCCATCTATAATCTTCATTGATGAGATTGATGCAATTGGAAGTAAGCGAGGTGGA 1343
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TATGCGCCATCTATAATCTTTATTGATGAGATTGATGCAATTGGAAGTAAGCGAGGTGGA 1320
Query 1344 CCCGATATTGGCGGGGGAGGAGCAGAGAGAGAACAAGGTTTGCTTCAAATATTGACTGAG 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCCGATATTGGCGGGGGAGGAGCAGAGAGAGAACAAGGTTTGCTTCAAATATTGACTGAG 1380
Query 1404 ATGGATGGATTTAAAGTTACTACATCACAAGTATTAGTCATAGGTGCAACAAATAGATTA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ATGGATGGATTTAAAGTTACTACATCACAAGTATTAGTCATAGGTGCAACAAATAGATTA 1440
Query 1464 GATATCCTTGATCCTGCTCTATTGAGAAAAGGTCGTTTTGACAAAATCATAAGAGTTGGT 1523
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1441 GATATCCTTGATCCTGCTCTCTTGAGAAAAGGTCGCTTCGACAAAATCATAAGAGTTGGT 1500
Query 1524 TTACCGTCAAAAGATGGTAGATTGGCGATATTAAAGGTACATGCTAGAAATAAATTCTTT 1583
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1501 TTACCGTCAAAAGATGGTAGATTGGCAATATTAAAGGTACATGCTAGAAATAAATTCTTT 1560
Query 1584 CGATCTGAGGATGAGAAGGAGGAGTTGCTGCAAGAAGTAGCTGAGAACACGGAAGATTTT 1643
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1561 CGATCTGAGGATGAGAAGGAGGAGTTGCTGCAAGAAGTAGCTGAGAACACAGAAGATTTT 1620
Query 1644 ACCGGAGCAGAACTGCAAAACGTTCTAAATGAAGCTGGAATCTTGACAGCTAGAAAAGAT 1703
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1621 ACTGGAGCAGAGCTGCAAAACGTTCTAAATGAAGCTGGAATCTTGACTGCTAGAAAAGAT 1680
Query 1704 TTGGATTACATTGGAAGAGAAGAACTCCTTGAGGCGCTTAAGCGGCAAAAAGGGACATTT 1763
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 TTAGATTACATTGGAAGAGAAGAACTCCTAGAGGCGCTTAAGCGGCAAAAAGGGACATTT 1740
Query 1764 GAGACTGGACAAGAAGATAGTACTGAAGTTCCAGAGGAACTGAAGTTGAGATTGGCTTAC 1823
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1741 GAGACTGGACAAGAAGATAGTACAGAAGTCCCAGAGGAACTGAAGTTGAGATTGGCTTAC 1800
Query 1824 CGAGAAGCAGCTGTTGCTGTTCTTGCTTGTTATCTCCCAGATCAATATCGTCCAATCAGC 1883
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1801 CGAGAAGCAGCTGTTGCTGTTCTTGCTTGTTATCTCCCAGATCAGTACCGTCCAATCAGC 1860
Query 1884 GAGACTGACATAAACTCGATTAGAAGCCAACCAAATATGCGTTACTCTGAAACTTCAGGA 1943
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1861 GAGACTGACATAAACTCGATCCGAAGCCAACCAAACCTGCGTTACACTGAAACTTCAGGA 1920
Query 1944 AGAGTTTTTGCGAGAAAGTCAGATTATGTGAACTCAATAATCCGTGCATGTGCTCCTAGA 2003
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1921 AGAGTTTTTGCGAGAAAGTCTGATTATGTAAACTCAATAATCCGTGCATGTGCTCCTAGA 1980
Query 2004 GTAGTTGAAGAAGAGATGTTTGGAATAGAAAACCTGTGTTGGATCTCTGCTAAGTCTACT 2063
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1981 GTAGTTGAAGAAGAGATGTTTGGAATAGAAAACTTGTGTTGGATCTCTGCTAAGTCTACT 2040
Query 2064 TTAGAAGCTTCACAGCGAGCGGAATTTCTGATTCTTCAGACGGGAATGACTGCTTTTGGA 2123
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2041 TTAGAAGCTTCACAGCAAGCGGAATTTCTGATTCTCCAGACGGGAATGACTGCTTTTGGA 2100
Query 2124 AAAGCTTATTACCGAAACCAAAGAGACCTCGTTCCTAATCTTGTTCCGAAACTTGAGGCA 2183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2101 AAAGCTTATTACCGAAACCAAAGAGACCTCGTTCCAAATCTTGTTCCGAAACTTGAGGCA 2160
Query 2184 TTACGCGATGAGTACATGAGGTTTGCTGTTGAGAAATGCTCATCAATCTTACAAGAGTAT 2243
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TTACGCGATGAATACATGCGGTTTGCTGTTGAGAAATGCTCATCAATCTTACAAGAGTAT 2220
Query 2244 CAATCAGCCCTTGAAGAAATCACAGATGTGCTTCTTGAGAAAGGAGAAATCAAAGCCGAT 2303
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2221 CAATCAGCACTTGAAGAAATCACAGATGTGCTTCTTGAGAAGGGAGAAATCAAAGCCGAA 2280
Query 2304 GAAATCTGGAACATTTACAACACAGCTCCAAGGATTCCTCAAAAACCCGTGAGACCTGTC 2363
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2281 GAAATTTGGAACATTTACAATACAGCTCCAAGGATTCCTCAAAAACCTGTGAGACCTGTC 2340
Query 2364 GATGAGTATGGAGCTTTAATCTATGCGGGAAGATGGGGAATTCACGGTGTATCGCTTCCT 2423
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2341 GATGAATATGGAGCTTTAATCTATGCGGGAAGATGGGGAATTCACGGTGTATCACTTCCT 2400
Query 2424 GGAAGAGTAACATTTTCACCAGGAAACATTGGTTTTGCAACATTTGGAGCTCCTCGTCCC 2483
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2401 GGAAGAGTAACGTTTTCACCAGGAAACATCGGTTTTGCAACATTTGGAGCTCCTCGTCCC 2460
Query 2484 ATGGAGACACAAATCATCAGCGATGACACATGGAAACTAGTGGATGAGATTTGGGATaaa 2543
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2461 ATGGAGACACAAATCATTAGTGATGACACATGGAAACTAGTGGATGAGATTTGGGATAAA 2520
Query 2544 aaggttgaagaaatcaaagcagaagctgttattcaaattgaagaagaaaagaagaaaCCT 2603
|||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 2521 AAGGTTGAAGAAATCAAAACAGAAGCTGTAATTCAAGTTGAAGAAGAAAAGAAGAAACCT 2580
Query 2604 CAGATTTTGATGGCAACCCATTTCTTTTAAAATCATTTTTCAGTTTTGCGGTCTCAAGAA 2663
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 2581 CAGATTTTGATGGCAACCCATTTCTTTTAAAACCATTTCTCAGTTTTGCCGTCTCAAGAA 2640
Query 2664 CATCAAA 2670
|||||||
Sbjct 2641 CATCAAA 2647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106538415265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5