BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64600.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496672 jgi|Araly1|496672|fgenesh2_kg.8__2488__AT5G64600.1 3055 0.0
> Ahg496672 jgi|Araly1|496672|fgenesh2_kg.8__2488__AT5G64600.1
Length=1829
Score = 3055 bits (1654), Expect = 0.0
Identities = 1778/1837 (97%), Gaps = 11/1837 (1%)
Strand=Plus/Plus
Query 1 CTTCATCGAAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCATCGGAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60
Query 61 CAATAGCAAGATTCTTCTCTAGAAAAGCTATTTCTCTCTACTTGATCTTCGTCTTTGCTT 120
||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 61 CAATAGCTAGATTCTTCTCTATAAAAGCTATTTCTCTCTACTTGATCTTCGTTTTTGCTT 120
Query 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATTCAAACCGATGATGACCACACCA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATACAAACCGATGATGACCACACCA 180
Query 181 AACATCAACAACAACATCATCGGGATCTAATCGATTCAGAATCATTTCCGCCACCGTATT 240
|||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AACATCAACAAC-A-A-CATCGGGATCTAATCGATTCTGAATCATTTCCGCCACCGTATT 237
Query 241 TGCCTCCTAGGAAGAATTTGCAGAAACCGTATGAAAATACTCAACTTTGGACTCCTCCTT 300
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 TGCCACCTAGGAAGAATTTGCAGAAACCGAATGAAAATACTCAACTTTGGACTCCTCCTT 297
Query 301 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCGAAATACAAAGAATTTTCAGAAT 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCTAAATACAAAGAATTTTCAGAAT 357
Query 361 CAGATCATTATATAACAGTGAAAAGTAATGGTGGACTAAATCAAATGCGTACTGGTATAG 420
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 358 CAGATCATTATGTAACAGTGAGAAGTAATGGTGGATTAAATCAAATGCGTACTGGTATAG 417
Query 421 CAGATATAGTGGCTGTTGCGCACATCATGAATGCAACTTTAGTCATTCCTGAGCTGGATA 480
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 CAGATATAGTCGCTGTTGCCCACATCATGAATGCAACTTTAGTCATTCCTGAGTTGGATA 477
Query 481 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACAATTCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACACTTCA 537
Query 541 TTAAATCATTGCGAAGAGATGTCAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 600
| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 TAAAATCCCTGAGAAGAGATGTGAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 597
Query 601 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 657
Query 661 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCAAAATCAGATTCTCGCCTTGCAA 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCGAAATCAGATTCTCGCCTTGCAA 717
Query 721 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGTCGTGTACTATATCGTGGTCTCT 780
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 718 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGCCGTGTACTGTATCGTGGTCTCC 777
Query 781 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 837
Query 841 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGATATGTTGGCTTTCACTGGTT 900
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGACATGTTGGCTTTCACTGGTT 897
Query 901 GCACCTATGGTCTCACTGATGCTGAATCCGAAGAACTGAGAGTAATGCGGGAAAGTACAA 960
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 898 GTACCTATGGTCTCACTGATGCTGAATCCGAGGAACTGAGAGTAATGCGGGAAAGTACAA 957
Query 961 GCCATTGGAAGATCAAAAGTATAAATTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1020
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 GCCATTGGAAGATCAAAAGTATAAACTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1017
Query 1021 TGACTCCAAAAGAAGTGGGAATATTTCTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 TGACTCCAAAAGAAGTGGGAATATTTTTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1077
Query 1081 TATATATTGCAGCAGGGGAAATCTATGGGGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1078 TATATATTGCAGCAGGGGAAATCTATGGAGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1137
Query 1141 GCTTCCCAAATCTGGTTTTTAAGGAAACGCTTGCTGGGAACGAAGAGTTAAAAGGTTTCA 1200
||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1138 GCTTCCCAAATCTAGTCTTTAAGGAAACGCTTGCTGGGAAAGAGGAGTTGAAAGGTTTCA 1197
Query 1201 CTGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1257
Query 1261 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1317
Query 1321 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGTTAAGATGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1318 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGGTAAGATGG 1377
Query 1381 AGAGAGGACAGCTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGAGAGGACAGTTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1437
Query 1441 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1497
Query 1501 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1557
Query 1561 AGGAGCACAAAGAACCCTAACTAAAATTTTCCAAACtttttttGTTCTGTATCATT-ACA 1619
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1558 AGGAGCACAAAGAACCCTAACTAAA-TTTTCCAAACTTTTTTTGTTCTGTATCATTTACA 1616
Query 1620 T-CTCATTTATAGTCATCTTAATTATAGTTTTCACATATCCCTTGATATCTTTTCTGTTT 1678
| |||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||
Sbjct 1617 TGCTCATTTATAGTCATCTTAATTATAGTTTTTACATATCTCTCGATATCTTT-CTGTTT 1675
Query 1679 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCCAGAAATTTTTAAC-ATTTAGTTAT 1737
||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1676 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCTAGAAATTTTTG-CTATTTAGTTAT 1734
Query 1738 AAAACTTCTCTTTCGGCATTTTTTCAAATATTCCAAATTTTAACCAAACTGTTGTCAATC 1797
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1735 AA--CTTCTCTTTCGGCATTTTTTCAAAGATTCCAAATTTTAACCAAACTATTGTCAATC 1792
Query 1798 AGAATGGAACAAGAATGAAACACCAAAGTTACTACTG 1834
||||||||||||||| |||||||||||||||| ||||
Sbjct 1793 AGAATGGAACAAGAAAGAAACACCAAAGTTACCACTG 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5