BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64610.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496673 jgi|Araly1|496673|fgenesh2_kg.8__2489__AT5G64610.1 2645 0.0
Ahg487793 jgi|Araly1|487793|fgenesh2_kg.6__927__AT5G09740.1 1282 0.0
> Ahg496673 jgi|Araly1|496673|fgenesh2_kg.8__2489__AT5G64610.1
Length=1531
Score = 2645 bits (1432), Expect = 0.0
Identities = 1498/1531 (98%), Gaps = 0/1531 (0%)
Strand=Plus/Plus
Query 2 TCTCCGACCCGACTAAAGAAATGGGATCGTCTGCGGATACAGAGACGGCGATGATAATCG 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCTCCGACCCGACTAAAGAAATGGGATCGTCTGCGAATACAGAGACGGCGATGATAATCG 60
Query 62 CCACACCGGCGTCGAACCATAATAATCCGGCAACCAACGGCGGAGATGCGAATCAGAATC 121
|| |||||||||||||| | | ||||||| |||||||||||||||||||| ||||||||
Sbjct 61 CCTCACCGGCGTCGAACAACCAGAATCCGGAAACCAACGGCGGAGATGCGAGTCAGAATC 120
Query 122 ATACTTCTGGTGCGATACTCGCTCTCACGAATTCAGAATCGGATGCTTCGAAGAAGAGAA 181
||||| ||| || |||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 121 ATACTCCTGCTGGGATACTCGCTCTCACGAACTCTGAATCGGATGCGTCGAAGAAGAGAA 180
Query 182 GAATGGGGGTGCTTCCGCTCGAGGTTGGTACTCGCGTGATGTGTCAATGGAGAGACGGAA 241
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAATGGGGGTGCTTCCGCTTGAGGTTGGTACTCGCGTGATGTGTCAATGGAGAGACGGAA 240
Query 242 AATACCATCCGGTGAAGGTTATCGAGCGCCGAAAGAATTATAATGGTGGTCACAATGATT 301
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 241 AATACCATCCGGTGAAGGTTATCGAGCGCCGGAAGAATTATAATGGTGGCCACAATGATT 300
Query 302 ACGAGTACTACGTTCATTACACAGAGTTTAATAGAAGATTGGATGAATGGATTAAGCTTG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGAGTACTACGTTCATTACACAGAGTTTAATAGAAGATTGGATGAATGGATTAAGCTTG 360
Query 362 AACAGCTTGACCTTGATTCAGTAGAGTGTGCTTTAGATGAAAAAGTTGAAGACAAGGTGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAGCTTGACCTTGATTCAGTAGAGTGTGCTTTAGATGAAAAAGTTGAAGACAAGGTGA 420
Query 422 CTAGCTTGAAGATGACACGACACCAGAAACGGAAGATTGATGAGACTCATGTAGAGGGTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGCTTGAAGATGACACGACACCAGAAACGGAAGATTGATGAGACTCATGTAGAGGGTC 480
Query 482 ATGAAGAGCTGGATGCTGCCAGTTTGCGTGAACACGAGGAGTTCACGAAAGTGAAGAACA 541
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAAGAGCTGGATGCTGCGAGTTTGCGTGAACACGAGGAGTTCACGAAAGTGAAGAACA 540
Query 542 TAGCTACGATTGAGCTTGGGAAGTATGAGATTGAGACGTGGTACTTCTCTCCTTTTCCTC 601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TAGCTACGATTGAGCTTGGGAAGTATGAGATTGAGACATGGTACTTCTCTCCTTTTCCTC 600
Query 602 CAGAATACAATGACTGCGTGAAGCTCTTTTTCTGTGAGTTTTGCCTCAGTTTTATGAAGC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGAATACAATGACTGCGTGAAGCTCTTTTTCTGTGAGTTTTGCCTCAGTTTTATGAAGC 660
Query 662 GCAAAGAGCAGCTTCAAAGACATATGAGGAAATGCGATTTGAAGCACCCCCCTGGGGATG 721
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAAAGAGCAGCTTCAAAGGCATATGAGGAAATGCGATTTGAAGCACCCCCCTGGGGATG 720
Query 722 AAATCTATCGAAGCTCTACTTTGTCAATGTTTGAGGTGGATGGCAAGAAGAATAAGGTCT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAATCTATCGAAGCTCTACTTTGTCAATGTTTGAGGTGGATGGCAAGAAGAATAAGGTCT 780
Query 782 ATGCACAGAACCTCTGTTATCTGGCAAAGTTATTTCTTGACCACAAAACTCTTTACTATG 841
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 ATGCACAGAACCTCTGTTATCTGGCAAAGTTATTTCTTGACCACAAGACTCTTTACTATG 840
Query 842 ACGTTGATTTGTTCCTGTTCTATATTCTCTGTGAATGTGATGATCGTGGATGCCACATGG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACGTTGATTTGTTCCTGTTCTATATTCTCTGTGAATGTGATGATCGTGGATGCCACATGG 900
Query 902 TTGGATACTTTTCAAAGGAAAAACACTCAGAAGAAGCTTACAACTTGGCTTGCATCCTTA 961
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 TTGGATACTTTTCAAAGGAAAAACACTCGGAAGAAGCTTACAACTTGGCTTGCATCCTTA 960
Query 962 CACTTCCTCCATATCAAAGGAAGGGCTATGGCAAATTCTTAATAGCCTTCTCCTATGAAC 1021
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 961 CACTTCCTCCATATCAAAGGAAAGGCTATGGCAAATTCCTAATAGCCTTCTCCTATGAAC 1020
Query 1022 TCTCAAAGAAAGAGGGCAAAGTCGGGACACCGGAAAGGCCGCTCTCTGATCTAGGGTTAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1021 TCTCAAAGAAAGAGGGCAAAGTCGGGACACCGGAAAGGCCGCTCTCTGATCTAGGTTTAG 1080
Query 1082 TGAGTTACAGAGGTTACTGGACTCGGATTTTATTAGACATTTTGAAAAAGCACAAGGGAA 1141
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 TGAGTTACAGAGGTTACTGGACTCGGATTTTATTAGACATCCTGAAAAAGCACAAGGGAA 1140
Query 1142 ACATATCTATCAAGGAGCTGAGCGACATGACAGCGATTAAAGCAGAAGATATATTAAGCA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACATATCTATCAAGGAGCTGAGCGACATGACAGCGATTAAAGCAGAAGATATATTAAGCA 1200
Query 1202 CCCTGCAGAGCTTGGAACTGATACAATACAGGAAAGGACAACACGTAATCTGCGCGGATC 1261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 CCCTGCAGAGCTTGGAACTGATACAATACAGGAAAGGACAACACGTGATCTGCGCGGATC 1260
Query 1262 CTAAGGTACTGGACCGACACTTGAAAGCGGCAGGCCGAGGTGGTCTTGATGTGGATGTGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTAAGGTACTGGACCGACACTTGAAAGCGGCAGGCCGAGGTGGTCTTGATGTGGATGTGA 1320
Query 1322 GCAAAATGATATGGACTCCTTACAAAGAGCAGAGCTAAGAGGGCATTACACTTCAAATAG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCAAAATGATATGGACTCCTTACAAAGAGCAGAGCTAAGAGGGCATTACACTTCAAATAG 1380
Query 1382 TTATGGTTATGGTCTACTTTTAATCTGCATATCCTTAGATGACTTTTGTCTGTAACAATT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1381 TTATGGTTATGGTCTACTTTTAATCTGCATATCCTTAGATGACTTTTGTCTGTAAAAATT 1440
Query 1442 TAACACGCACTCTGTTCAATAGATCTTGTAACTGTAGGAATCTTTTGTCTGGATGGTAAA 1501
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1441 TAACACGCACTTTGTTCAATAGATCTTGTAACAGTAGGAATCTTTTGTCTGGATGGTAAA 1500
Query 1502 ACGATCAGTAGTAACTTTGGTGTTTCATTCT 1532
||||||||| |||||||||||||||| ||||
Sbjct 1501 ACGATCAGTGGTAACTTTGGTGTTTCTTTCT 1531
> Ahg487793 jgi|Araly1|487793|fgenesh2_kg.6__927__AT5G09740.1
Length=1558
Score = 1282 bits (694), Expect = 0.0
Identities = 1045/1214 (86%), Gaps = 26/1214 (2%)
Strand=Plus/Plus
Query 156 AGAATCGGATGCTTCGAAGAAGA-GAAGAATGGGGGTGCTTCCGCTCGAGGTTGGTACTC 214
||| |||||| | |||||||||| ||| ||||||| ||||| | || || || |||||||
Sbjct 180 AGAGTCGGATCCGTCGAAGAAGAGGAA-AATGGGGATGCTTTCTCTGGAAGTGGGTACTC 238
Query 215 GCGTGATGTGTCAATGGAGAGACGGAAAATACCATCCGGTGAAGGTTATCGAGCGCCGAA 274
| |||||||||| ||||||||||||||| |||||||||| || || || ||||||||
Sbjct 239 GTGTGATGTGTCGGTGGAGAGACGGAAAACACCATCCGGTCAAAGTAATTGAGCGCCG-- 296
Query 275 AGAATTATAATGGTGGTCACAATGATTACGAGTACTACGTTCATTACACAGAGTTTAATA 334
| | || ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 297 -G-------A-GG-ATTCATAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATA 346
Query 335 GAAGATTGGATGAATGGATTAAGCTTGAACAGCTTGACCTTGATTCAGTAGAGTGTGCT- 393
| || |||||||||||| | |||| || || || |||||||||||||||||||| |||
Sbjct 347 GGAGGCTGGATGAATGGACTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTG 406
Query 394 TTAGATGAAAAAGTTGAAGACAAGGTGACTAGCTTGAAGATGACACGACACCAGAA-ACG 452
|| ||||||||||| ||||||||||| || ||| ||||||||||||| |||||||| | |
Sbjct 407 TT-GATGAAAAAGTGGAAGACAAGGTAACGAGCCTGAAGATGACACGCCACCAGAAGA-G 464
Query 453 GAAGATTGATGAGACTCATGTAGAGGGTCATGAAGAGCTGGATGCTGCCAGTTTGCGTGA 512
|||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 465 GAAGATCGATGAGACACATGTAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGA 524
Query 513 ACACGAGGAGTTCACGAAAGTGAAGAACATAGCTACGATTGAGCTTGGGAAGTATGAGAT 572
||| || |||||||||||||||||||||||| | || ||||||||||| || ||||||||
Sbjct 525 ACATGAAGAGTTCACGAAAGTGAAGAACATATCAACAATTGAGCTTGGAAAATATGAGAT 584
Query 573 TGAGACGTGGTACTTCTCTCCTTTTCCTCCAGAATACAATGACTGCGTGAAGCTCTTTTT 632
|||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 585 TGAGACTTGGTACTTCTCCCCTTTTCCGCCAGAATACAATGAATGTGTGAAGCTCTTTTT 644
Query 633 CTGTGAGTTTTGCCTCAGTTTTATGAAGCGCAAAGAGCAGCTTCAAAGACATATGAGGAA 692
|||||||||||||| | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct 645 TTGTGAGTTTTGCCTGAACTTCATGAAACGCAAAGAACAGCTTCAAAGGCATATGAGGAA 704
Query 693 ATGCGATTTGAAGCACCCCCCTGGGGATGAAATCTATCGAAGCT-CTACTTTGTCAATGT 751
|| || |||||||||||||||| |||||||| |||||||| | ||| ||||||||||
Sbjct 705 GTGTGACCTGAAGCACCCCCCTGGTGATGAAATTTATCGAAG-TGGTACCTTGTCAATGT 763
Query 752 TTGAGGTGGATGGCAAGAAGAATAAGGTCTATGCACAGAACCTCTGTTATCTGGCAAAGT 811
||||||| |||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 764 TTGAGGTAGATGGCAAAAAGAACAAGGTTTATGCACAGAATCTCTGTTACCTGGCAAAGT 823
Query 812 TATTTCTTGACCACAAAACTCTTTACTATGACGTTGATTTGTTCCTGTTCTATATTCTCT 871
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
Sbjct 824 TATTTCTTGACCACAAAACTCTTTACTACGACGTTGATTTGTTTCTGTTCTACGTTCTTT 883
Query 872 GTGAATGTGATGATCGTGGATGCCACATGGTTGGATACTTTTCAAAGGAAAAACACTCAG 931
| |||||||||||||| |||||||||||||||||||||||||||||||| || || || |
Sbjct 884 GCGAATGTGATGATCGAGGATGCCACATGGTTGGATACTTTTCAAAGGAGAAGCATTCGG 943
Query 932 AAGAAGCTTACAACTTGGCTTGCATCCTTACACTTCCTCCATATCAAAGGAAGGGCTATG 991
||||||| |||||||| ||||| || || || || |||||||||||||| || |||||||
Sbjct 944 AAGAAGCATACAACTTAGCTTGTATTCTAACCCTGCCTCCATATCAAAGAAAAGGCTATG 1003
Query 992 GCAAATTCTTAATAGCCTTCTCCTATGAACTCTCAAAGAAAGAGGGCAAAGTCGGGACAC 1051
| ||||||||||||||||| ||||| ||||| ||||||||||| || ||||| |||||||
Sbjct 1004 GAAAATTCTTAATAGCCTTTTCCTACGAACTGTCAAAGAAAGAAGGAAAAGTTGGGACAC 1063
Query 1052 CGGAAAGGCCGCTC-TCTGATCTAGGGTTAGTGAGTTACAGAGGTTACTGGACTCG-GAT 1109
||||||| || || || |||||||| ||| | || ||||||||||| |||||||| | |
Sbjct 1064 CGGAAAGACC-CTTGTCGGATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTG-T 1121
Query 1110 TTTATTAGACATTTTGAAAAAGCACAAGGGAAACATATCTATCAAGGAGCTGAGCGACAT 1169
| ||||||| || |||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 1122 TCTATTAGATATCTTGAAAAAACATAAAGGAAACATATCTATCAAGGAGCTGAGTGACAT 1181
Query 1170 GACAGCGATTAAAGCAGAAGATATATTAAGCACCCTGCAGAGCTTGGAACTGATACAATA 1229
|||||| || || || ||||||||| ||||||| || |||||| | ||||||||||| ||
Sbjct 1182 GACAGCAATCAAGGCGGAAGATATACTAAGCACACTTCAGAGCCTAGAACTGATACAGTA 1241
Query 1230 CAGGAAAGGACAACACGTAATCTGCGCGGATCCTAAGGTACTGGACCGACA-CTTGAAAG 1288
||||||||||||||||| ||||| |||||||| ||||| ||||||||||| || |||||
Sbjct 1242 TAGGAAAGGACAACACGTGATCTGTGCGGATCCAAAGGTTCTGGACCGACATCT-GAAAG 1300
Query 1289 CGGCAGGCCGAGGTGGTCTTGATGTGGATGTGAGCAAAATGATATGGACTCCTTACAAAG 1348
| ||||||||||||||||||||||| ||||| |||||| |||| ||||| ||||||| |
Sbjct 1301 CTGCAGGCCGAGGTGGTCTTGATGTAGATGTTAGCAAACTGATTTGGACACCTTACAGGG 1360
Query 1349 AGCAGAGCTAAGAG 1362
| ||||| | ||||
Sbjct 1361 ACCAGAGTTGAGAG 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5