BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64620.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951294 jgi|Araly1|951294|scaffold_803181.1 920 0.0
> Ahg951294 jgi|Araly1|951294|scaffold_803181.1
Length=580
Score = 920 bits (498), Expect = 0.0
Identities = 554/581 (95%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 22 CTCAAAACCTTCTTCCTGAAATGGCTTCTTCTCTCATCTTCCTCCTCCTCGTTACCCTAA 81
||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CTCAAAACCTTCTTCTTGAGATGGCTACTTCTCTCATCTTCCTCCTCCTCGTTACCCTAA 60
Query 82 CCTTTTCAGCATCAACCCTAATCTCAGCCAAATCCAACACAACAACAATAATCGAATCAA 141
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 61 CCTTTTCAGCATCAACCCTAATCTCAGCCAAATCC-A-AC-ACAACAATAATCGAATCAA 117
Query 142 CTTGCAAAACCACAAACTACTACAAATTCTGCGTCTCAGCTCTCAAATCCGACCCAAGAA 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTTGCAAAACCACAAACTACTACAAATTCTGCGTCTCAGCTCTCAAATCCGACCCAAGAA 177
Query 202 GTCCCACAGCCGACACAAAAGGTCTCGCCTCCATTATGGTCGGCGTTGGTATGACAAACG 261
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 178 GTCCCACAGCCGACACAAAAGGTCTAGCCGCCATTATGGTCGGCGTTGGTATGACAAACG 237
Query 262 CCACCTCCACCGCAAATTACATCGCTGGAAACCTATCCGCCACCGTAAAAGACACCGTTC 321
||||||||||||||| |||| |||| || |||||||||||||||||||| |||||||| |
Sbjct 238 CCACCTCCACCGCAACTTACCTCGCCGGGAACCTATCCGCCACCGTAAATGACACCGTCC 297
Query 322 TCAAAAAGGTCTTACAAGATTGCTCCGAGAAGTATGCTCTCGCCGCTGATTCTCTCCGGC 381
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTAAAAAGGTCTTACAAGATTGCTCCGAGAAGTATGCTCTCGCCGCTGATTCTCTCCGGC 357
Query 382 TGACGATTCAAGATCTTGATGATGAAGCTTATGACTATGCCTCCATGCATGTGTTGGCGG 441
| || || |||||||||||| | |||||||||||||| || |||||||||||||||||||
Sbjct 358 TAACAATCCAAGATCTTGATAACGAAGCTTATGACTACGCTTCCATGCATGTGTTGGCGG 417
Query 442 CGCAGGATTATCCTAATGTTTGCCGGAATATTTTTAGGCGGGTTAAAGGGTTGGCTTATC 501
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 418 CGCAGGATTATCCTAATGTTTGCCGGAATATGTTTAGGCGAGTTAAAGGGTTGGCTTATC 477
Query 502 CGGTGGAGATTCGCCGGCGTGAAGCTAGTCTGAGACGTATTTGTGGTGTTGTCTCCGGGA 561
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 478 CGGTGGAGATTCGCCGGCGTGAAGCGAGTCTGAGACGTATATGCGGTGTTGTCTCCGGGA 537
Query 562 TTCTTGATCGCCTTGTTGAATGATTTACATTTGCATTAACT 602
|||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCTTGATCGCCTTGTTGAATGATTTACATTTGCATTAACT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5