BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64630.2
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496675 jgi|Araly1|496675|fgenesh2_kg.8__2491__AT5G64630.2 2693 0.0
> Ahg496675 jgi|Araly1|496675|fgenesh2_kg.8__2491__AT5G64630.2
Length=1792
Score = 2693 bits (1458), Expect = 0.0
Identities = 1695/1805 (94%), Gaps = 33/1805 (2%)
Strand=Plus/Plus
Query 28 TTTTAGTTATTCTTCTTCCCAGTAAT-CCACAAACCCTAGAAAATTTTCTCAAGAAAATC 86
|||||||| |||||||||||| |||| ||||||||||||| |||||||||| ||||||||
Sbjct 1 TTTTAGTTCTTCTTCTTCCCACTAATCCCACAAACCCTAG-AAATTTTCTCGAGAAAATC 59
Query 87 CGAATCACGATTCTGGGCATTGTGGAGGATTGACAAAAATGAAGGGAGGTACGATACAGA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGAATCACGATTCTGGGCATTGTGGAGGATTGACAAAAATGAAGGGAGGTACGATACAGA 119
Query 147 TAAGTTGGCACGATGGGAAGCCGGTGCTAACCGTAGATTTTCACCCGATTTCCGGTTTAC 206
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 120 TAAGTTGGCACGATGGGAAACCGGTGCTAACCCTAGATTTTCACCCGATTTCCGGTTTAC 179
Query 207 TCGCCACCGCCGGAGCCGATTACGATATCAAGCTATGGTTGATAAATTCGGGTCAAGCGG 266
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 180 TCGCCACCGCCGGAGCCGATTACGACATCAAGCTATGGTTGATAAATTCTGGTCAAGCGG 239
Query 267 AGAAGAAGGTTCCTAGTGTATCTTATCAGAGTAGCCTTACTTACCATGGATGTGCTGTCA 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAGAAGGTTCCTAGTGTATCTTATCAGAGTAGCCTTACTTACCATGGATGTGCTGTCA 299
Query 327 ATACCATTCGTTTTTCTCCATCTGGGGAACTACTTGCCTCGGGAGCAGACGGAGGTGAGC 386
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 300 ATACCATTCGTTTTTCTCCATCTGGGGAACTACTTGCCTCGGGAGCAGATGGAGGCGAGC 359
Query 387 TTTTTATATGGAAGTTGCATCCTAGTGAAACCAATCAGTCCTGGAAAGTTCACAAATCAT 446
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TTATTATATGGAAGTTGCATCCTAGTGAAACCAATCAGTCCTGGAAAGTTCACAAATCTT 419
Query 447 TATCATTTCATCGAAAGGATGTCCTGGATCTTCAGTGGTCTCCTGATGATGCATATCTTA 506
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 420 TATCATTTCATCGAAAGGATGTCCTGGATCTCCAATGGTCTCCTGATGATGCCTATCTGA 479
Query 507 TTTCTGGCTCAGTGGACAACTCTTGCATTATATGGGACGTTAACAAAGGTTCTGTCCATC 566
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 480 TTTCTGGCTCAGTGGACAACTCTTGCATTATATGGGACGTTAGCAAAGGTACTGTCCATC 539
Query 567 AGATACTGGATGCCCATTGTCATTATGTTCAAGGTGTTGCCTGGGATCCCTTAGCAAAGT 626
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 AGATACTGGATGCCCACTGTCATTATGTTCAAGGTGTTGCCTGGGATCCCTTAGCTAAGT 599
Query 627 ATGTAGCCTCTCTTAGTTCAGACAGAACATGCCGTATATATGCCAATAAGCCTCAAACAA 686
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 ATGTAGCCTCTCTTAGTTCAGACAGAACATGCCGTATATATGTCAATAAGCCTCAAACAA 659
Query 687 AGAGTAAAGGTGTTGAAAAAATGAACTATGTTTGCCAGCATGTTATCATGAAAGCAGATC 746
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 AGAGTAAAGGTGTTGAAAAAATGAACTATGTTTGCCAGCATGTTATCACAAAAGCAGATC 719
Query 747 AGCAACGGGGTGATGAAACTAAGACAATAAAAACCCATCTCTTTCATGATGAGACATTGC 806
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCAACGGGGAGATGAGACTAAGACAATAAAAACCCATCTCTTTCATGATGAGACATTGC 779
Query 807 CGTCTTTCTTTCGAAGATTGTCATGGTCACCTGATGGATCTTTTTTACTCATTCCAGCAG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTCTTTCTTTCGAAGATTGTCATGGTCACCTGATGGATCTTTTTTACTCATTCCAGCAG 839
Query 867 GTTCTTTCAAGGTTTCACCCACATCCGAAGCTGTAAATGCTACCTATGTCTTTTCTAGGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTCTTTCAAGGTTTCACCCACATCCGAAGCTGTAAATGCTACCTATGTCTTTTCTAGGA 899
Query 927 AGGACCTTTCAAGACCTGCACTGCAGCTTCCTGGCGCCAGCAAACCGGTTGTAGTGGTTC 986
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 900 AGGACCTTTCAAGACCTGCACTGCAGCTTCCAGGTGCCAGCAAACCGGTTGTAGTGGTTC 959
Query 987 GTTTTTGCCCTGTTGCATTTAAACTCCGTGGTTCAAGTTCTGAAGAGGGTTTCTTCAAGC 1046
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 960 GTTTTTGCCCTGTTGCATTCAAACTCCGTGGTTCAAATTCTGAAGAGGGTTTCTTCAAGC 1019
Query 1047 TTCCTTACCGTCTTGTCTTTGCCATTGCAACTTTAAACTCCGTGTACATATATGACACAG 1106
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1020 TTCCTTACCGTCTTGTCTTTGCCATAGCAACTTTAAATTCGGTGTACATATATGACACAG 1079
Query 1107 AGTGTGTCGCTCCAATTGCAGTCTTAGCAGGTCTCCACTATGCTGCAATAACCGATATAA 1166
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 AGTGTGTTGCTCCAATTGCAGTCTTAGCAGGTCTCCACTACGCTGCAATAACCGATATAA 1139
Query 1167 CATGGTCACCTAATGCATCGTATCTGGCACTGTCCTCACAAGATGGCTATTGCACACTAG 1226
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1140 CATGGTCACCTAATGCATCGTATCTAGCACTGTCCTCACAAGATGGCTACTGCACACTAG 1199
Query 1227 TTGAATTTGAAGATAAAGAACTAGGAGAAGCTGTC--T--C-CATTT-CAGTTGGAAAGA 1280
||||||| |||||||| |||||||||||| | || | | || || ||||||||| ||
Sbjct 1200 TTGAATTCGAAGATAACGAACTAGGAGAATCCATCCCTATCTCAATTACAGTTGGAAGGA 1259
Query 1281 AACCTGTTGATGGTGAGGAGAAAAAGCATGATTTAGAGAAAGGC-GATGAACTAATGACA 1339
|||| || |||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1260 AACCCGTCGATGCTGAGGAGAAAAAGCATGATTTAGAGAAAG-CTGATGAACTAATGACC 1318
Query 1340 GAAACAACACCAGACGAGAGCAAGAAACAAGCTGAATTAGAACAAAACGAAGAGAGCAAA 1399
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1319 GAAACAACACCAGACGAGAGCAAGAAACAGGCTGAATTAGAACAAAACGAAGAGAACAAA 1378
Query 1400 CAGCCATTGCCAAGCAAAATTACCACGGATGGTAAGGAAAAAGAGCATATTATGCAGAAA 1459
||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1379 CAGCCATTGCCGAGCAAAATTACCACGGATGGTGAGGAGAAAGAGCATGTTATGCAGAAA 1438
Query 1460 ACCGATGATGAAGTAATGACAGAAACAAGACATGAGGAAGAGAATCAGCCATTACAGAGC 1519
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1439 ACCGATGATGAAGTGATGACAGAAACAAGGCATGAGGAAGAGAATCAGCCATTGCAGAGC 1498
Query 1520 AAAGTTAACACACCGGTCTCAAATAAACCAGCAAGGAAACGCATCACACCCATGGCTATT 1579
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1499 AAAGTTAACACACCGGTCTCAAATAAACCAGCAAGGAAGCGCATCACACCAATGGCTATT 1558
Query 1580 GACCCCTGATGTCGTCAT-TTTCCATCAGTGttttttt-tt-tAACTCTGATACAAATAG 1636
||||||| ||| | | || ||| | | | | | | || || ||||| ||||||||
Sbjct 1559 GACCCCTAATGAC-TGATGTTTTCTTTT-TCCATCTGTCTTGTA-CTCTGCTACAAATAT 1615
Query 1637 CTTTCTCATAGGCTACATTTAGACATCAAAATGAATCGTATTG-A-CGGCCATGTTGGAA 1694
||||||||||| |||||||||||||||||| || || | |||| | ||||||||||||||
Sbjct 1616 CTTTCTCATAGTCTACATTTAGACATCAAA-TGTAT-GAATTGTATCGGCCATGTTGGAA 1673
Query 1695 ATGGACTTGTTTCTTTAGTCATACGTCTCGTCTCTAAAGGCAATGTACATA--TAGAC-- 1750
|||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 1674 ATGGACTTGTTTATTTAGTCATATGTCTCGTCTC-AAAGGCAATGTACATAGATAGACTC 1732
Query 1751 ACAT--GTATGAACGTTCACATGAGATGGTTTTGCGTACATTGTGGATCATTAT-TGGGC 1807
|||| ||||||||| || || |||||||||||||||||||||||||||| | |||||
Sbjct 1733 ACATATGTATGAACG--CA--TGTGATGGTTTTGCGTACATTGTGGATCATT-TCTGGGC 1787
Query 1808 TCGTA 1812
|||||
Sbjct 1788 TCGTA 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5