BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64640.1
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951297 jgi|Araly1|951297|scaffold_803184.1 2983 0.0
> Ahg951297 jgi|Araly1|951297|scaffold_803184.1
Length=1851
Score = 2983 bits (1615), Expect = 0.0
Identities = 1777/1856 (96%), Gaps = 7/1856 (0%)
Strand=Plus/Plus
Query 72 AAATATCTTCTCTCTCCCTCCAATGGATTCTCCGACACTACCGCACTCTATCTCCGCCTC 131
||||||| | ||||||||||||||||||||||||| ||| ||| ||||| ||||||||||
Sbjct 1 AAATATC-T-TCTCTCCCTCCAATGGATTCTCCGAAACTCCCGTACTCTCTCTCCGCCTC 58
Query 132 TTCCTCCACCCCATTCGCTTCCGCCGCCGTAAAACCTCACCGGAATAAACTCCTTTCCCG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTCCTCCACCCCATTCGCTTCCGCCGCCGTAAAACCTCACCGGAATAAACTCCTTTCCCG 118
Query 192 TAATGGCATCCTCATCATCATCGCCGCGTCCTGTATTCTCCTCCTCCTCATATCTCTCCT 251
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 TAATGGCATCCTCATCATCATCGCCGTGTCCTGTATTCTCCTCCTCCTCATATCTCTCCT 178
Query 252 CATCTACGCCACCGTCTCAAAATCCTCCCGCAACCACCATAATCCATCGCACCAAACCCC 311
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 179 CATCTACGCCACCGTCTCAAAATCCTCCCGCAGCCACCGTAATCCATCGCACCAAACCCC 238
Query 312 AACCTCCGACGATCATCCTCCGCCGGAAACACCTCCTTCTCCTCCACCAATCGCTCAGAT 371
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 239 AACCTCCGACGATCATCCTCCGCCGGAAACACCTCCTTCTCCTCCTCCAATTGCTCAGAT 298
Query 372 CCGTCTCGCATGCAACGCAACGCGTTTCCCAGATCATTGCGTTGCCTCGCTCTCTAAACC 431
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 CCGTCTCGCATGTAACGCAACGCGTTTCCCAGACCATTGCGTTGCCTCGCTCTCTAAACC 358
Query 432 CGGTCAAGTCCCTCCGGATCCTAAACCGGTTCAAATAATCCACTCTGCAATTTCAGTCTC 491
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 GGGTCAAGTCCCTCCGGATCCTAAACCGGTCCAAATAATCCACTCTGCAATTTCAGTCTC 418
Query 492 CTACGAGAATCTCAAATCCGGCCAATCGAAAATCCAATCAATCCTAGACTCCTCCGCAGG 551
|| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 419 CTTCGAGAATCTCAAATCCGGCCAATCAAAAATCAAATCAATCCTAGACTCCTCCGCAGG 478
Query 552 GAATCGAAACCGTACGAACATCGCCACCATTTGCCTCGAGATCCTCTCTTACTCTCAACA 611
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAATAAAAACCGTACGAACATCGCCACCATTTGCCTCGAGATCCTCTCTTACTCTCAACA 538
Query 612 CCGTACCGAATCAACAGACATAGCCGTGACGAGCGGCGATATCAAAGACGCACGTGCGTG 671
||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 539 CCGTACCGAATCAACGGACATCGCCGTGACGAGCGGCGAAATCAAAGACGCTCGTGCTTG 598
Query 672 GATGAGCGCAGCTCTAGCTTACCAATTCGATTGCTGGTCAGGTCTCAAAACCGTCAACGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GATGAGCGCAGCTCTAGCTTACCAATTCGATTGCTGGTCAGGTCTCAAAACCGTCAACGA 658
Query 732 CACTAAGCAAGTCGTCGACACGATTACGTTCTTCGAAGGTCTCGTGAACCTCACCGGAAA 791
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 659 CACGAAGCAAGTCGTCGACACGATCACGTTCTTCGAAGATCTCGTGAACCTCACCGGAAA 718
Query 792 CGCGTTGAGCATGATGTTATCGTTCGACAGTTTCGGAGACGACGTCGTTTCGTGGATTCG 851
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 719 CGCGTTGAGCATGATGTTATCGTTCGATAATTTTGGAGACGACGTCGTTTCGTGGATTCG 778
Query 852 TCCAGCGACGGAAAGAGACGGGTTTTGGGAGAAAGCTGGGCCGAGTTTGGGCTCGGGTAC 911
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 TCCAGCGACGGAAAGAGATGGGTTTTGGGAAAAAGCTGGGCCGAGTTTGGGCTCGGGTAC 838
Query 912 GGGTACAGAGGCTAGTTTGGGTTTTCCGTCTGGTTTAACGGAAGACGTGACGGTGTGTAA 971
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGGTACAGAGGCTAATTTGGGTTTTCCGTCTGGTTTAACGGAAGACGTGACGGTGTGTAA 898
Query 972 AAACGGAGGGAAAGATTGTAAATACAAAACAGTGCAAGAAGCCGTTGATTCCGCGCCGGA 1031
|||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 899 AAACGGAGGGAAAGCGTGTAATTACAAAACGGTGCAAGAAGCCGTTGACGCAGCGCCGGA 958
Query 1032 TACAAACAGAACTGTAAAGTTTGTGATACGTATTAGAGAAGGTGTGTATGAAGAAACCGT 1091
||| ||| |||| || |||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 959 TACTAACGGAACCGTTAAGTTTGTGATACGGATTAAAGAAGGTGTGTATGAGGAAACCGT 1018
Query 1092 TAGGGTTCCGTTTGAGAAAAAGAATGTCGTCTTCATCGGTGACGGAATGGGTAAAACGGT 1151
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1019 TAGGGTTCCGTTTGAGAAAAAGAACGTCGTCTTCATCGGTGACGGAATGGGCAAAACGGT 1078
Query 1152 AATTACAGGGTCGTTGAATGTTGGACAACCAGGGATGACAACGTTTGAA-TCTGCAACTG 1210
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1079 AATTACAGGGTCGTTGAATGTTGGACAACCAGGGATGACAACGTTT-AACTCTGCAACTG 1137
Query 1211 TCGGAGTTCTCGGTGATGGATTTATGGCTCGTGATTTAACTATAGAGAACACGGCAGGAG 1270
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1138 TCGGAGTTCTCGGTGATGGATTTATGGCTCGTGATTTAACCATAGAGAACACAGCAGGAG 1197
Query 1271 CAGATGCGCACCAAGCGGTTGCGTTTAGATCAGACAGTGATTTTTCGGTACTTGAAAACT 1330
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 1198 CAGATGCGCACCAAGCGGTTGCGTTTAGATCAGACAGTGATTTCTCGATACTCGAAAACT 1257
Query 1331 GCGAGTTTCTTGGGAACCAAGACACTCTTTATGCTCACTCTCTCCGTCAGTTCTACAAAC 1390
| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 GTGAGTTTCTTGGGAATCAAGACACTGTTTATGCTCACTCTCTCCGTCAGTTCTACAAAC 1317
Query 1391 AATGTCGAATCCAAGGCAACGTAGACTTCATCTTTGGTAACTCAGCTGCCGTATTCCAAG 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AATGTCGAATCCAAGGCAACGTAGACTTCATCTTTGGTAACTCAGCTGCCGTATTCCAAG 1377
Query 1451 ATTGTGATATCCTAATCGCTTCAAAACACTCCAAACTCGAGCAAGGCGGTGCAAACAACG 1510
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1378 ACTGTGATATCCTAATCGCTTCAAAAAATTCCAAACTCGAGCAAGGCGGTGCAAACAACG 1437
Query 1511 CGATCACAGCACACGGGAGGATTGATGCGTCGCAGTCCACGGGATTTGTGTTTTTGAACT 1570
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CGATCACAGCACACGGTAGGATTGATGCGTCGCAGTCCACGGGATTTGTGTTTTTGAACT 1497
Query 1571 GTTCGATTAACGGAACAGAGGAATACATGAAGGAGTTTCAAGCTAACCCTGAAGGGCATA 1630
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1498 GTTCGATTAACGGAACAGAGGAATACATGAAGGAGTTTCAAGCTAACCCTAAAGGGCATA 1557
Query 1631 AGAACTTCTTGGGAAGACCGTGGAAGGAGTTTTCGAGGACGGTTTTTGTAAACTGTAATC 1690
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAACTTCTTGGGGAGACCATGGAAGGAGTTTTCGAGGACGGTTTTTGTAAACTGTAATC 1617
Query 1691 TTGAGTCTTTGATTAGTCCTGATGGATGGATGCCTTGGAACGGGGATTTCGCATTGAAGA 1750
| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1618 TAGAGTCTTTAATTAGTCCTGATGGATGGATGCCTTGGAGCGGGGATTTCGCATTGAAGA 1677
Query 1751 CTTTGTATTACGGTGAGTATAAGAATACGGGTCCGGGATCGGTTAGATCGAGTAGGGTTC 1810
||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1678 CTTTGTATTACGGTGAGTACAAGAATAAGGGTCCGGGATCGGTTAGAACGAATAGGGTTC 1737
Query 1811 CATGGAGTAGTGAGATACCAGAGAAGCATGTTGATGTTTACTCTGTTGCCAATTTTATTC 1870
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1738 CATGGAGTAGTGAGATACCAGAGAAGCATGTTGATGTTTACTCTGTGGCCAATTTTATTC 1797
Query 1871 AGGCTGATGAGTGGGCTTCCACGACTGCTTGATTTTTGTAAAGGAAACAT-GAGGT 1925
|||||||||||||||||||||||||||||||||||| || ||||||| || |||||
Sbjct 1798 AGGCTGATGAGTGGGCTTCCACGACTGCTTGATTTT-GTGAAGGAAA-ATTGAGGT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5