BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64650.1
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 990 0.0
Ahg940438 jgi|Araly1|940438|scaffold_600982.1 564 3e-160
> Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1
Length=689
Score = 990 bits (536), Expect = 0.0
Identities = 642/692 (93%), Gaps = 11/692 (2%)
Strand=Plus/Plus
Query 3 TCGCATTCTCCGATCGAATCGCCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 62
||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 TCGCATTTTCCGATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 60
Query 63 CAGCAGGTCACCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGCAACACGAGC 122
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CAGCTGGTCATCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGA 120
Query 123 GAATTGAGACCACTGTTACAAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTC 182
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 121 GAATTGAGACCACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTC 180
Query 183 AACTCGGAAAAGAGGGTTCACTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAG 242
|||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACTTGGAAAAGAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAG 240
Query 243 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTCATCGATACAAAGATAGAGCTGGTG 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTG 300
Query 303 GATACACAAGAATGCTTCGTACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATA 362
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 301 GATACACAAGAATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATA 360
Query 363 TCGAGTTTATCGATAGAGAGAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTC 422
|||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 361 TCGAGTTTATTGATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGC 420
Query 423 CACCTCGAGTGCCACTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 482
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACCTCGAGTGCCGCTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 480
Query 483 CAAAGGAGGAAAAAACTTCTGATTCTGACCTATAAATAGAAGAAGATCTCTCTCGCTCTC 542
|||||||||| |||| || ||||| |||||||||||| |||| ||||||||||||||
Sbjct 481 CAAAGGAGGAGAAAAGTTGGGATTCCGACCTATAAATATAAGA---TCTCTCTCGCTCTC 537
Query 543 TCACACCAGAAGATCATGtttt-tt----ttCCCCT-T-GCCCATGTTGTTTCTCCTTCA 595
|||||||| ||||||||||||| || || |||| | |||||||||||||||| ||||
Sbjct 538 TCACACCAAAAGATCATGTTTTGTTCCCCTTGCCCTGTTGCCCATGTTGTTTCTCTTTCA 597
Query 596 ACCCATAGCTTTGTATGTCTGGCACCTTATTCATCACTGTCATTCACAATGTGT-TTAAA 654
|||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| || ||
Sbjct 598 ACCCATAGCTTTGTGTGTCTGTCACCTTATTCATCAATGTCATTCACAATATGTGTTGAA 657
Query 655 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 686
||||||||||||||||||||||||||||||||
Sbjct 658 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 689
> Ahg940438 jgi|Araly1|940438|scaffold_600982.1
Length=524
Score = 564 bits (305), Expect = 3e-160
Identities = 436/499 (87%), Gaps = 10/499 (2%)
Strand=Plus/Plus
Query 24 CCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCAGGTCACCGTATGTCCA 83
|||||| |||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 10 CCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACCGTATGTCCA 69
Query 84 TGCTCAGGACTATGGTTTCTCAATTGGTGCAA-CACGAGCGAATTGAGACCACTGTTACA 142
|||||||||| ||||||||||| || ||| || |||||||| ||||||||||| || ||
Sbjct 70 TGCTCAGGACAATGGTTTCTCAGTTAGTG-AAGCACGAGCGTATTGAGACCACCGTCACT 128
Query 143 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAGGGTTCA 202
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 129 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAGAGGGTACA 188
Query 203 CTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTTCACAAGATT 262
|| ||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 189 CTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTTCACAAGATT 248
Query 263 TTTACAGAATTGGC-TCATCGATACAAAGATAGAGCTGGTGGATACACAAGAATGCTTCG 321
|| || |||||||| | || |||||||||||||||||||||||||||||||| |||| ||
Sbjct 249 TTCACTGAATTGGCAT-ATAGATACAAAGATAGAGCTGGTGGATACACAAGACTGCTCCG 307
Query 322 TACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATATCGAGTTTATCGATAGAGA 381
||||||||| || |||||||||||||| || |||||||||||||||||||| || |||||
Sbjct 308 TACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATTGACAGAGA 367
Query 382 GAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTCCACCTCGAGTGCCACTTG- 440
|||||| || |||||||| |||||||| || |||||||| |||| |||||||| |||
Sbjct 368 GAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTGCCG-TTGG 426
Query 441 ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGGAAAAAA-C 498
| ||||||| ||||| || ||||||| ||||| | ||||| || |||||||| |||| |
Sbjct 427 ACCCATGGGAAAGATCTCGGCTCACCAAGCAGT-TCGCTCCGCCTAAGGAGGAGAAAAGC 485
Query 499 TTCTGATTCTGACCTATAA 517
| |||||||||| || |||
Sbjct 486 T-CTGATTCTGAGCTGTAA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5