BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64650.1 Length=699 Score E Sequences producing significant alignments: (Bits) Value Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 990 0.0 Ahg940438 jgi|Araly1|940438|scaffold_600982.1 564 3e-160 > Ahg496679 jgi|Araly1|496679|fgenesh2_kg.8__2495__AT5G64650.1 Length=689 Score = 990 bits (536), Expect = 0.0 Identities = 642/692 (93%), Gaps = 11/692 (2%) Strand=Plus/Plus Query 3 TCGCATTCTCCGATCGAATCGCCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 62 ||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||| Sbjct 1 TCGCATTTTCCGATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 60 Query 63 CAGCAGGTCACCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGCAACACGAGC 122 |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 CAGCTGGTCATCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGA 120 Query 123 GAATTGAGACCACTGTTACAAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTC 182 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| Sbjct 121 GAATTGAGACCACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTC 180 Query 183 AACTCGGAAAAGAGGGTTCACTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAG 242 |||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 181 AACTTGGAAAAGAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAG 240 Query 243 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTCATCGATACAAAGATAGAGCTGGTG 302 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTG 300 Query 303 GATACACAAGAATGCTTCGTACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATA 362 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 301 GATACACAAGAATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATA 360 Query 363 TCGAGTTTATCGATAGAGAGAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTC 422 |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| | Sbjct 361 TCGAGTTTATTGATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGC 420 Query 423 CACCTCGAGTGCCACTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 482 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CACCTCGAGTGCCGCTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 480 Query 483 CAAAGGAGGAAAAAACTTCTGATTCTGACCTATAAATAGAAGAAGATCTCTCTCGCTCTC 542 |||||||||| |||| || ||||| |||||||||||| |||| |||||||||||||| Sbjct 481 CAAAGGAGGAGAAAAGTTGGGATTCCGACCTATAAATATAAGA---TCTCTCTCGCTCTC 537 Query 543 TCACACCAGAAGATCATGtttt-tt----ttCCCCT-T-GCCCATGTTGTTTCTCCTTCA 595 |||||||| ||||||||||||| || || |||| | |||||||||||||||| |||| Sbjct 538 TCACACCAAAAGATCATGTTTTGTTCCCCTTGCCCTGTTGCCCATGTTGTTTCTCTTTCA 597 Query 596 ACCCATAGCTTTGTATGTCTGGCACCTTATTCATCACTGTCATTCACAATGTGT-TTAAA 654 |||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| || || Sbjct 598 ACCCATAGCTTTGTGTGTCTGTCACCTTATTCATCAATGTCATTCACAATATGTGTTGAA 657 Query 655 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 686 |||||||||||||||||||||||||||||||| Sbjct 658 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 689 > Ahg940438 jgi|Araly1|940438|scaffold_600982.1 Length=524 Score = 564 bits (305), Expect = 3e-160 Identities = 436/499 (87%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 24 CCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCAGGTCACCGTATGTCCA 83 |||||| |||||||||||||||||||||||| ||||| || || |||||||||||||||| Sbjct 10 CCGACGCAGAAATGACCAAGTTCAGGAAGCTTGGCCGGCCGGCGGGTCACCGTATGTCCA 69 Query 84 TGCTCAGGACTATGGTTTCTCAATTGGTGCAA-CACGAGCGAATTGAGACCACTGTTACA 142 |||||||||| ||||||||||| || ||| || |||||||| ||||||||||| || || Sbjct 70 TGCTCAGGACAATGGTTTCTCAGTTAGTG-AAGCACGAGCGTATTGAGACCACCGTCACT 128 Query 143 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAGGGTTCA 202 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 129 AAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGGTTCAACTCGGCAAAGAGGGTACA 188 Query 203 CTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTTCACAAGATT 262 || ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct 189 CTCGCTGCCGCAAGGAGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTTCACAAGATT 248 Query 263 TTTACAGAATTGGC-TCATCGATACAAAGATAGAGCTGGTGGATACACAAGAATGCTTCG 321 || || |||||||| | || |||||||||||||||||||||||||||||||| |||| || Sbjct 249 TTCACTGAATTGGCAT-ATAGATACAAAGATAGAGCTGGTGGATACACAAGACTGCTCCG 307 Query 322 TACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATATCGAGTTTATCGATAGAGA 381 ||||||||| || |||||||||||||| || |||||||||||||||||||| || ||||| Sbjct 308 TACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATTGACAGAGA 367 Query 382 GAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTCCACCTCGAGTGCCACTTG- 440 |||||| || |||||||| |||||||| || |||||||| |||| |||||||| ||| Sbjct 368 GAACGAACTTAGGCAATCGAAACCAGCAACACCTCAACCACCACAACGAGTGCCG-TTGG 426 Query 441 ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGGAAAAAA-C 498 | ||||||| ||||| || ||||||| ||||| | ||||| || |||||||| |||| | Sbjct 427 ACCCATGGGAAAGATCTCGGCTCACCAAGCAGT-TCGCTCCGCCTAAGGAGGAGAAAAGC 485 Query 499 TTCTGATTCTGACCTATAA 517 | |||||||||| || ||| Sbjct 486 T-CTGATTCTGAGCTGTAA 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25694846058 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5