BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64660.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496680 jgi|Araly1|496680|fgenesh2_kg.8__2496__AT5G64660.1 2230 0.0
Ahg487801 jgi|Araly1|487801|fgenesh2_kg.6__935__AT5G09800.1 564 8e-160
> Ahg496680 jgi|Araly1|496680|fgenesh2_kg.8__2496__AT5G64660.1
Length=1474
Score = 2230 bits (1207), Expect = 0.0
Identities = 1407/1500 (94%), Gaps = 28/1500 (2%)
Strand=Plus/Plus
Query 26 TTTATTTTGGAGCTAATCGGAAAACAAAAAAGCAACGGCCAAAGCAATGAGGAAAGATGA 85
||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 TTTCTTTTGGAGCAAATCGGAAAACAAAAAATCAACGGCCAAAGCAATGAGGAAGGATGA 60
Query 86 TCTCTGCATCACTGTTCCTACCTTCTTCCGATGTCCTATATCTCTCGACGTTATGAAATC 145
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCTCTGCATCACTGTTCCGACGTTCTTCCGATGTCCTATATCACTCGACGTTATGAAATC 120
Query 146 TCCGGTGAGTCTTTGCACCGGCGTTACCTACGATCGAGCTAGTATCCAACGGTGGCTTGA 205
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCCGGTGAGTCTTTGCACCGGTGTTACCTACGATCGAGCTAGTATCCAACGGTGGCTCGA 180
Query 206 CGGCGGGAATAACACTTGTCCGGCGACGATGCAGATTCTTCAGAATAAAGATTTCATACC 265
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 181 CGGCGGGAATAATACTTGTCCGGCGACGATGCAGGTTCTTCAGAATAAGGATTTCATACC 240
Query 266 GAATCGGACTCTTCAACGTCTTATCGAGATTTGGTCTGATTCTGTTCGTCGTCGAACTTG 325
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 241 TAATCGGACTCTTCAACGTCTTATCGAGATTTGGTCCGACTCTGTTCGTCGTCGAGTTTG 300
Query 326 TGTTGAATCGGCGGAATTAGCTGCTCCGAcgagagacgagatcgccgatgcgatcgatag 385
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 301 TGTTGAATCGGCGGAATTAGCTGCTCCGACGAGAGACGAGATCTCCGATGCGATTGATAG 360
Query 386 agtgaagatcgagaaagaagaaagagatgatcgCGAGGTTTTGTCGAAGATTGTTCGATT 445
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTGAAGATCGAAAAAGAAGAAAGAGATGATCGCGAGGTTTTGTCGAAGATTGTTCGATT 420
Query 446 CGGGAGAGAATCTGATGATAACAGAGGATTTCTCGCCGGAAAAGATGATTTCGTGAAACT 505
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CGGAAGAGAATCTGATGATAACAGAGGATTTCTCGCCGGAAAAGATGATTTCGTGAGACT 480
Query 506 TCTCGTGGATCTGATTAATCAGGTGGATTTCGAAACCACCTCCGCCGCGAAATCTCTGGT 565
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 481 TCTCGTGGATCTGATTAATCAGGTAGATTTCAAAACAACCTCCGCCGCGAAATCTCTGGT 540
Query 566 TGTTCAAGAAGCGGTGAAGATTCTGAGTACGATTCGAAGCAAAGTCTCAGATCGGAGACG 625
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 541 TGTTCAAGAAGCGGTGAAGATTCTGAGTATGATTCGAACCAAAATCTCAGATCGGAGACG 600
Query 626 GTTTTCGAATCTGATTTTAACCAACGGTCGAGATCGGTTATCGGTGATCGTCTACTTGTT 685
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 601 GTTTTCGAATCTGATTTTAACCAACGGTCGAGATCGGTTAACCGTCATCGTCTACTTGTT 660
Query 686 TAAAACCGGGAATGTCGAATTGAAAATTGATTGCGCCGGTTTACTTGAGTTCATCGCCGT 745
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 TAAAACCGGGAATGACGAATTGAAAATCGATTGCGCCGGTTTACTTGAGTTCATCGCCGT 720
Query 746 CGACGCTGAATCAAAGCTGTTAATCGCCGAGAGAGATGGAT-TAATCACGGAGCTAATGA 804
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 721 AGACGCTGAGTCAAAGCTGTTAATCGCCGATAGAGATGG-TGTAATCACGGAGCTAATGA 779
Query 805 AATCGATTAGTAAAGATTCTGATTTAAGTTTAATCGAATCGAGTTTATCGTGCTTGATCG 864
|||||||||| |||||||| |||||||| |||||||||||| |||||||||| |||||||
Sbjct 780 AATCGATTAGCAAAGATTCCGATTTAAGCTTAATCGAATCGGGTTTATCGTGTTTGATCG 839
Query 865 CGATTAGCTCACCGAAACGTGTGAAACTCAATCTCCTCCGAGAGAAACTCATCGGAGATG 924
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 840 CGATTAGCTCACCGAAACGTGTGAAACTCAATCTAATCCGGGAGAAACTCATCGGAGATG 899
Query 925 TTACGAAACTGTTATCAGATTCAACGTCGTCGTTGAGCGTTTCGGTGACGGAGAAATGCT 984
|||| ||| |||||||||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 900 TTACCAAATTGTTATCAGATTCAACGT--T-GTCGAGCGTTTCGGTGACTGAGAAATGCT 956
Query 985 TGAAGCTTCTGGAGATTTTAGCATCTACAAAGGAAGGGAGATCGGAAATTTGCGGCGGAG 1044
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 957 TGAAGCTTCTCGAGATTTTAGCATCCACTAAGGAAGGGAGATCGGAAATCTGCGGCGGAG 1016
Query 1045 ATGGCGAGTGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTGTCAACGGCGGCGACGG 1104
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1017 ATGGCGAGTGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTTTCGACGGCGGCGACGG 1076
Query 1105 AGCACGCCGTGACGGTGCTGTGGAGTGTTTCTTATCTATTCAAAGAAGATAAAGCTTTGG 1164
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1077 AGCACGCCGTGACGGTGCTATGGAGTGTTTCTTATCTTTTCAAAGAAGATAAAGCTTTGG 1136
Query 1165 AAGCTGTTACAAGTGTTAACGGAGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCT 1224
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGCTGTTACGAGTGCTAACGGCGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCT 1196
Query 1225 CTCCCGCCGTTAGACGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGAT 1284
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTCCCGCCGTTAGGCGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGAT 1256
Query 1285 CTTGCCTTTCGGCTTACGACACCAAAACGACACATATCATGCCGTTTTAAATCAATTCTT 1344
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1257 CTTGCCTTTCGGCTTACGACACCAAAACGACACATATCATGCCGTTTTAA-TCAATTCTT 1315
Query 1345 TTACTACTTACTAGGGTT-CGTTTTTAGGATTTGTTTCTTGGGAAAGAGGTAAGAACAAT 1403
|| |||||||||||||| |||| ||||||||||||||||||||||||||||| || |
Sbjct 1316 TTTTTACTTACTAGGGTTTCGTTCTTAGGATTTGTTTCTTGGGAAAGAGGTAA-AA---T 1371
Query 1404 TGTAAAACTAAAATGAAATTTTTGAATAGTGAATATAAACTAAAAAAGAAGATTCAATTC 1463
| ||| | | || ||||||||||||||||||||||| || ||||||||||
Sbjct 1372 -G-AAA--T----T----TT---GAATAGTGAATATAAACTAAAAA-GA-GATTCAATTC 1414
Query 1464 ATTGCTCATTGAATGTGTAGTCTATTATTCTCTTATTAATGTAAAGTAAAATCAATTAAT 1523
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1415 ATTGCTCATTGAATGTGTAGTCTATTATTCTCTTATTACTGTAAAGTAAAATCAAATAAT 1474
> Ahg487801 jgi|Araly1|487801|fgenesh2_kg.6__935__AT5G09800.1
Length=1330
Score = 564 bits (305), Expect = 8e-160
Identities = 984/1302 (76%), Gaps = 86/1302 (7%)
Strand=Plus/Plus
Query 63 GCCAAAGCAATGAGGAAAGATGATCTCTGCAT---CACTGTTCCTACCTTCTTCCGA-TG 118
|||||| | ||||||| || ||||| | ||| ||| || ||| ||||| | | ||
Sbjct 26 GCCAAAAC-ATGAGGAGCGACGATCTTTACATCACCACCGTCCCTTGTTTCTT-CAAGTG 83
Query 119 TCCTATATCTCTCGACGTTATGAAATCTCCGGTGAGTCTTTGCACCGGCGTTACCTACGA 178
||| || || || || || |||||||||||||||||||| | |||||||||||| |||||
Sbjct 84 TCCGATTTCACTTGATGTGATGAAATCTCCGGTGAGTCTCTCCACCGGCGTTACATACGA 143
Query 179 TCGAGCTAGTATCCAACGGTGGCTTGACGGCGGGAATAACACTTGTCCGGCGACGATGCA 238
|||| ||| |||||||| ||||| || || || || || |||||||| || ||||||||
Sbjct 144 CCGAGTTAGCATCCAACGTTGGCTCGATGGTGGTAACAATACTTGTCCCGCCACGATGCA 203
Query 239 GATTCTTCAGAATAAAGATTTCATACCGAATCGGACTCTTCAACGTCTTATCGAGATTTG 298
|||||||||||| ||||| ||| |||| || | || || || ||||| || || | ||
Sbjct 204 GATTCTTCAGAACAAAGAATTCGTACCTAACCTAACACTCCACCGTCTCATTGATCTCTG 263
Query 299 GTCTGATTCTGTTC-GTCGTCGAACTTGTGT-TGAATCGGCGGAATTAGCTGCTCCGAcg 356
||| || || || ||||| | || | ||| || |||||| | | |||| ||
Sbjct 264 GTCCGACTC-CATCAACCGTCGTGCCGGT-TCTGAGTCTCCGGAATCAAATACTCCCTCG 321
Query 357 agagacgagatcgccgatgcgatcgatagagtgaagat-cgagaaagaagaaagagatga 415
||||||| ||| || |||||| | || ||| || || || | || || ||| |
Sbjct 322 CGAGACGAAATCAACGCTGCGAT---T-GA--GAAAATCCG-GATTG-AG-AA-TGATAA 371
Query 416 tcgCGAGGT-TTTGTCGAAGATTGTTCGATTCGGGAGAGAATCTGATGATAACAGAGGA- 473
| |||| || || ||||||||| | || |||| || |||||||||||| |||||| ||
Sbjct 372 TTGCGACGTACTT-TCGAAGATTCTCCGGTTCGCGAAAGAATCTGATGAGAACAGA-GAG 429
Query 474 TTTCTCGCCGGAAAAGATGATTTCGT-GAAACTTCTCGTGGATCTGATTAAT-CAGGTGG 531
|||||||||||||||||||||||||| | | | || |||||||| ||| || || | |
Sbjct 430 TTTCTCGCCGGAAAAGATGATTTCGTAGGTA-TGCTTGTGGATCTCATT-ATCCAATTCG 487
Query 532 ATTTCGAAACCAC--CTCCGCCGCGAAATCT-CTGGTTGTTCAAGAAGCGGTGAAGATTC 588
| ||| | | ||| ||| | | ||| | | | ||| |||||||||||||||||
Sbjct 488 A-TTCCAGA-CACTTCTCGGGTTCTCAAT-TGATACTCGTTGGAGAAGCGGTGAAGATTC 544
Query 589 TGAGTACGATTCGAAGCAAAGTC-TCAGATCGGAGACGGTTTTCGAATCTGATTTTAACC 647
|||| | |||| | | ||| || || |||||||||||||| ||||||||||| ||| ||
Sbjct 545 TGAGCATGATTTGCCGGAAAATCTTC-GATCGGAGACGGTTATCGAATCTGATCTTATCC 603
Query 648 AACGGTCGAGATCGGTT-ATCGGT-GATCGT-CTACTTGTTTAAAACCGGGAATGTC-GA 703
|||||| | ||| | || | | || || | ||| ||| |||||| ||||||| | |
Sbjct 604 AACGGTGGCGATTGCTTGA-C-GTCCTTCTTCCTA-TTGATTAAAAGCGGGAAT-CCTAA 659
Query 704 ATTGAAAATTGATTGCGCCGGTTTACTTGAGTTCATCGCCGTCGACGCTGAATCAAAGCT 763
|||||| || ||||| ||| | |||||||| ||||||||||| || || ||||||||
Sbjct 660 ATTGAAGATCGATTGTTCCGCCGTGCTTGAGTTTATCGCCGTCGATGCCGAGTCAAAGCT 719
Query 764 GT-TAATCGCCGAGAGAGATGGATTAATCA-CGGAGCTAATGAAATCGATTAG-TAAAGA 820
| |||||||||||||||| |||||| ||| | ||| | ||| ||||||| || | |||
Sbjct 720 -TATAATCGCCGAGAGAGACGGATTAGTCATC-GAGATTATGGAATCGATAAGCT-CAGA 776
Query 821 TTCTGATTTAAGTTTAATCGAATCGAGTTTAT-CGTGCTTGATCGCGATTAGC-TCACCG 878
||| |||| ||| ||||||||| ||||||||| | || || ||||||||| || || |
Sbjct 777 TTCAGATTCAAGCTTAATCGAAGCGAGTTTATCCTTG-TTAATCGCGATT-GCGTCTTCA 834
Query 879 AAACGTGTGAAACTC-AATCTCCTCCGAGAGAAACTCA-TCGGA-GATG-TTACGAAACT 934
||||| ||||||||| || | || ||||||| || | || | || | | |||| |
Sbjct 835 AAACGCGTGAAACTCTCAT-TAATCAGAGAGAAGCT-AGTC--ACGAAGCTCACGAGTTT 890
Query 935 GTTATCAGATTCAACGTCGTCGTTGAGCGTTTCGGTGACGGAGAAATGCTTGAAGCTTCT 994
|||| ||||| ||| | | ||||||||| ||||| ||||||||| | || |||||
Sbjct 891 GTTAACAGATCCAA---CAAC---GAGCGTTTCAGTGACAGAGAAATGCCTAAAACTTCT 944
Query 995 -GGAGATTTTAGCATC-TACAAAGGAAGGGAGATCGGAAATTTGCGGCGGAGATGGCGAG 1052
| || |||| | || | |||| ||||| ||||||| || |||| | | | | || |
Sbjct 945 CGAAGCTTTT-TCGTCTTGCAAA-GAAGGTCGATCGGAGATATGCGAC-G-G-T-GC--G 996
Query 1053 TGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTGTCAACGGCGGCGACGGAGCACGCC 1112
|| || |||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 997 TGCGTGGAGACGGTGGTTAAGAAGCTGATGAAAGTATCGACGGCGGCGACTGAACACGCC 1056
Query 1113 GTGACGGTGCTGTGGAGTGTTTCTTATCTATTCAAAGAAGATAAAGCTTTGGAAGCTGTT 1172
|| ||||| ||||||| || | |||||| ||||| ||| | || || || || |||
Sbjct 1057 GTCACGGTTTTGTGGAGCGTCTGTTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTT 1116
Query 1173 AC-AAGTGTTAACGGAGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCTCTCCCGC 1231
| ||| | ||||| |||||||| || |||||||| |||||||| |||||||| | |
Sbjct 1117 ATTAAGACT-AACGGCGTTACGAAGATACTGTTACTTTTACAGAGTAATTGCTCGCTTAC 1175
Query 1232 CGTTAGACGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGATCTTGCCT 1291
|||||| | |||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1176 CGTTAGGCATATGCTAACGGATCTTCTTAAGGTCTTGAAGGTGAACTCAAGATCTTGCCT 1235
Query 1292 TTCGGCTTAC-GACACCAAAACGACACATATCATGCCGTTTT 1332
|| | || || |||||||||||||| || ||||||||||
Sbjct 1236 TTA---T-ACCGAAACCAAAACGACACACATTATGCCGTTTT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5