BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64667.1

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496681 jgi|Araly1|496681|fgenesh2_kg.8__2497__AT5G64667.1         556    5e-158


> Ahg496681 jgi|Araly1|496681|fgenesh2_kg.8__2497__AT5G64667.1
Length=498

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 390/430 (91%), Gaps = 18/430 (4%)
 Strand=Plus/Plus

Query  1    ATTTCTTGCTGTCAACAAATTCATTCAGCAATCTCCTTTTTCCCCATCAACAACAAACAA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    ATTTCTTGCTGTCAACAAATTCATTCAGCAATCTCCTTTTTCCCCATCAACAACAAAC-A  59

Query  61   AAAATAAAGTCCTTTCACAACAATTATATTTAGAACAAATTCACCAAAAACCCTTCCACA  120
            |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||
Sbjct  60   AAAATAAAGTCCTTTCACAACAATTATA-TTA-AACAAATCCACCAAAAACCCTTTCACA  117

Query  121  AAAAACCTCTCTTCTTCAACAATGTCGTCTCGAAACCAAAGATCAAGAATCACCTCT-AG  179
            ||| |  |||| |||||||||||||||||| |||||| |||||||||||||| |||| ||
Sbjct  118  AAATAGGTCTC-TCTTCAACAATGTCGTCTAGAAACCGAAGATCAAGAATCAACTCTAAG  176

Query  180  Tttcttcgtctccttcttcactagaaccattcttcttcttctcattcttcttcttggttt  239
                ||| | | ||||||||| || ||||||||||||| | ||  ||  ||||| |||||
Sbjct  177  ----TTC-T-T-CTTCTTCACAAGTACCATTCTTCTTC-T-TC--TC--CTTCTAGGTTT  223

Query  240  ctGCAATGGAGCAAGAACAAACACGAACGTCTTCAACTCGAAACCACACAAGAAGCACAA  299
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct  224  ATGCAATGGAGCAAGAACAAACTCGAACGTCTTCGACTCGAAACCACACAAGAAACACAA  283

Query  300  CGACGCCGTTTCTTCTTCAACTAAACAGTTCTTGGGGTTCTTGCCACGTCACTTCCCTGT  359
            |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  284  CGACGCCGTTTCGTCTTCATCGAAACAGTTCTTGGGGTTCTTGCCACGTCACTTCCCTGT  343

Query  360  TCCAGCTTCTGGTCCCTCCAGAAAACACAATGATATTGGTTTACTTAGTTGGCATCGATC  419
            |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct  344  TCCAGCTTCTGGTCCCTCTAGAAAACACAATGATATCGGTTTACTTAGTTGGCACCGAGC  403

Query  420  TTCTCCGTGA  429
            ||||||||||
Sbjct  404  TTCTCCGTGA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25046756469


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5