BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64670.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496682 jgi|Araly1|496682|fgenesh2_kg.8__2498__AT5G64670.1 1812 0.0
> Ahg496682 jgi|Araly1|496682|fgenesh2_kg.8__2498__AT5G64670.1
Length=1200
Score = 1812 bits (981), Expect = 0.0
Identities = 1133/1205 (94%), Gaps = 15/1205 (1%)
Strand=Plus/Plus
Query 16 AAATCTCATAAACCCTAAATCCCCAAAATGGAATAATCAAAATTTCATCAG--G-AGATC 72
||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||
Sbjct 1 AAATCTCATAAACCCTAAATCCCCAAAATGGCATAATCAAATTTTCATCAGAAGAAGATC 60
Query 73 TCTAAAATCGAAATCTACTTGATCCCGCAACGAAGAAATGTTAAGAAGAAGACTCTTGTC 132
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 61 GCTAAAATCGAAATCTGCTTGATCCCGCAACGAAGAAATGATAAGAAGAAGACTCTCGTC 120
Query 133 GATCATATCAACATCACTCATCAATTCTTCGTTTCATCAAACCGCGAAACCCAGATTCAT 192
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GATCATATCAACATCACTCATCAATTCTTCGTTTCATCAAACCGCAAAACCCAGATTCAT 180
Query 193 CATTTCTTCACCACTTCTTCAATGCCGTCCTTCTCCGATCTCTACTCAAATTCCGACCTC 252
||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 181 CATCTCTTCACCACTTCTTCAATGCCGTCATTCTCCGATCTCTACTCAAATCCCGACCTT 240
Query 253 TACGAGCAGGGCTTTGTCGTTTCAAGGAATC-AGGGCTTATAGTTTATTGAGCTTGAACG 311
|||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||
Sbjct 241 TACGAGCAGGGCTTTGTCGTTTCAGGGAA-CTAGGGCGTATAGTTTATTGAGCTTGAACG 299
Query 312 ATCTGAGAGACAATGTGCCGAGAAAACTCAAGACGAGGAAAGGAAGAGGTATTGGGTCTG 371
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTGAGAGACAATGTGCCGAGAAAGCTCAAGACGAGGAAAGGAAGAGGTATTGGGTCTG 359
Query 372 GTAAAGGTAAAACTGCTGGAAGAGGTCACAAGGGGCAAAAAGCGAGAGGAACGATGAAGT 431
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 GTAAAGGTAAAACTGCTGGAAGAGGTCACAAGGGGCAAAAAGCGAGAGGAACAATGAAGT 419
Query 432 TTGGTTTCGAAGGTGGTCAGACTCCACTACGACGTCGTTTACCCAAACGTGGCTTCAAGA 491
||||||| |||||||| || |||||| | |||||||||||||| ||||||||||||||||
Sbjct 420 TTGGTTTTGAAGGTGGGCAAACTCCATTGCGACGTCGTTTACCTAAACGTGGCTTCAAGA 479
Query 492 ACAAATTTAAGCTCCATTTTCAGCCGGTTGGTCTAGGGAAGATTGCTAAACTCATAAACG 551
|||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 480 ACAAGTTTAAGCTCCATTTTCAGCCGGTTGGTCTAGGAAAGATCGCCAAACTCATAAACG 539
Query 552 CTGGGAAGATAGATTCTCATGAATTGATTACAATGAAAACGCTCAAGGATGTGGGAGCCA 611
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 CTGGGAAGATAGATTCTCATGAATTGATTACGATGAAAACGCTCAAGGATGTGGGAGCCA 599
Query 612 TAGGAAAGCAAATAGAAGATGGAGTAAGACTAATGGGTCGTGGTGCTGATGATATCAAAT 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 TAGGAAAGCAAATAGAAGATGGAGTAAGACTAATGGGTCGTGGTGCTGATGATATCCAAT 659
Query 672 GGCCACTTCATTTCGAGGTTTCGAGAGTGACGGTTAGGGCCAAAGAGGTGGTGGAAGCAG 731
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 GGCCACTTCATTTCGAGGTTTCGAGAGTGACGGTTAGGGCAAAAGAGGTGGTGGAAGCAG 719
Query 732 CAGGAGGATCAGTGAGAAGAGTGTATTACAACAAGTTGGGCTTAAGGGCATTGCTTAAAC 791
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 CAGGAGGATCAGTGAGAAGAGTGTATTACAACAAGTTGGGCTTAAGAGCATTGCTTAAAC 779
Query 792 CGGAATGGTTTGAGAAGAAAGGAAGGTTATTGCCAAAAGCAGCGCGACCACCTCCTAAAC 851
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CGGAATGGTTTGAGAAGAAAGGAAGGTTATTGCCGAAAGCAGCGCGACCACCTCCTAAAC 839
Query 852 AACAAGATAAGGTTGATAGCATTGGACGTCTTCCAGCTCCGAAAAAACCCATTCCCTTCT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AACAAGATAAGGTTGATAGCATTGGACGTCTTCCAGCTCCGAAAAAACCCATTCCCTTCT 899
Query 912 TTGCAGCTGAGGAGACCAAAGTTGAATCTCCTGTTGAATCATAATTTTGGGCT-GCCATT 970
||||||||||||| | ||||||||| || ||||||||||||| |||| ||| | | | ||
Sbjct 900 TTGCAGCTGAGGAAAACAAAGTTGATTCCCCTGTTGAATCATGATTT-GGGATTGGC-TT 957
Query 971 -TAACGTTTGATGTTTCTGTTTAA-GTTGTTTGTGTTGTTTCTTGGTCAATGTTCACCAC 1028
|||||||||||||||| |||||| ||||||||||||||||||||||||| |||| | ||
Sbjct 958 CTAACGTTTGATGTTTCGGTTTAAAGTTGTTTGTGTTGTTTCTTGGTCAAAGTTCTC-AC 1016
Query 1029 TAGAAAATTGAGAATGTCGGAT-TTTA-ATTTGACAAATAAGGTCTTTCTCGTTTTACTT 1086
|||| |||||||||| ||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 1017 CAGAAGATTGAGAATGCCGGATATTTTTAGTTGCCAAATAAGGTCTTTCTCGTTTTACTT 1076
Query 1087 TATCTGTAGTTGGCCACAACAAGTTATTCAACCATTTTCAGACTTGTTGTTTGGGATCAA 1146
| |||||| |||| | ||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1077 TTTCTGTATTTGGTCGCAACAAGTTCTT-AACCATTTTCAGACTTCTTGTTTGGGATCAA 1135
Query 1147 GGCCTGTTCTTGTAGAAGGTTGAGAAAACCAGAGAACAATC-ACGTTAGATTTGAATTCA 1205
|||||||||||| ||||||| ||| |||| || |||||||| ||||||||||||||||||
Sbjct 1136 GGCCTGTTCTTGAAGAAGGTAGAGGAAACAAGTGAACAATCTACGTTAGATTTGAATTCA 1195
Query 1206 TTATT 1210
|||||
Sbjct 1196 TTATT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5