BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64680.3
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496683 jgi|Araly1|496683|fgenesh2_kg.8__2499__AT5G64680.1 979 0.0
> Ahg496683 jgi|Araly1|496683|fgenesh2_kg.8__2499__AT5G64680.1
Length=825
Score = 979 bits (530), Expect = 0.0
Identities = 752/853 (88%), Gaps = 39/853 (5%)
Strand=Plus/Plus
Query 1 GTTTTAGGTCATCGCCG-AATTGCTATTTCTCCGGTTTTGTGAAATCGCGAGAGCTGATT 59
||||||||||||||||| || | |||||||||| |||||||| ||| |||||||||||
Sbjct 1 GTTTTAGGTCATCGCCGCCATCGATATTTCTCCGTTTTTGTGACCTCGTGAGAGCTGATT 60
Query 60 TGAGCAGAGATGGATTTC-GATT-TCAAAGTTTCCGGAGATTTCATAGTCAGTGGCGCAG 117
|||||||||||||| ||| | || | ||| | ||| ||||| | |||||||||||||||
Sbjct 61 TGAGCAGAGATGGA-TTCTGGTTAT-AAACCTGCCGAAGATTACGTAGTCAGTGGCGCAG 118
Query 118 AGCAGCTAGATGACACTGATTTGACGCGTTCTGATGAGTTTTGGCTTATCCAAGCCCCTT 177
|||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AGCAGCTAGATGACGCTGATATAACGCGTTCTGATGAGCTTTGGCTTATCCAAGCCCCTT 178
Query 178 TAGGCCAATTTCCAGAAATCGAAGAGAACACTCTTAAGATTGAGCCAGACAAAGATGGGT 237
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 179 TAGGCCGATTTCCAGAAATCGAAGAGGACACTCTTAAGGTTGAGCCAGACAAAGATGGGT 238
Query 238 TATTTGGAGAATTCAAGGATTCAAATGCTGGCTCATTACACCTTTGTTTAGGTGCAAAGT 297
||||||||| |||| ||| | | ||| | | | |||| |||||
Sbjct 239 TATTTGGAGGATTCGAGG------A---T---TCA--A-A--------T-GGTGGAAAGT 274
Query 298 ATGATCTTGCTAGCTTTCA-TTCTCAAGATGCTGGTGCAGAGTTGATTATACCTTCTGAA 356
||||||||||||||||| | || |||||||| || |||||||||||||||||||||||||
Sbjct 275 ATGATCTTGCTAGCTTT-ACTTGTCAAGATGTTGATGCAGAGTTGATTATACCTTCTGAA 333
Query 357 GAATCAATGATTGTTGGGAAGATTACTCGGCGAGTTGCATTAGTTCGTTACCCTGAACCA 416
||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 334 GAATCAATGATTGCTGGGAAGATTGCTCGGCGGGTTGCAATAGTTCGTTACCCTGAACCA 393
Query 417 AACGAGTTGCTTCAGAAAATGAAGGCTAGAACACAACAGAAGCTTGTCGGATCAGTGACG 476
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 394 AACGAGCTGCTTCAGAAAATGAAGGCCAGAACACAACAGAAGCTTGTTGGATCAGTCACG 453
Query 477 AATTCCTCTAAGAAATCATCTAACCTTACTCAAAGCAGCCGGCATAAAAGCGGCACACGT 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 454 AATTCCTCTAAGAAATCATCTAACCTAACTCAAAGCAGCCGGCATAAAAGCGGTACACGT 513
Query 537 AGCAGCAGAGAGAAGAGCATGTTCTCTGGCTTCACCGAGACTCCAAAGTCGCCaaaaaga 596
||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 514 AGCAGCAAATCGAAGAGCATGTTCTCTAGCTTCACCGAGACTCCAAAGTCGCCAAAAAGA 573
Query 597 aaaaaTTCAGAGTCTTCCTCAGGTAAACATCGGAGCTCAACAAGTACGGTTTCAGGCTCT 656
||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 574 AAACATTCAGAGTCCTCCTCAGGTAAACATCGGAGCTCAACAAGTACCGTTTCAGGGTCT 633
Query 657 TCAGAACGATCAGCAAAG-TCCA-A-GAAGAAGGTGAAGAAGGAAGAGTAAAGATCTTTG 713
||||||||||| | |||| | | | ||||||||||||||||||||| |||||||||||
Sbjct 634 TCAGAACGATCGGGAAAGATTAAGAAGAAGAAGGTGAAGAAGGAAGAATAAAGATCTTTA 693
Query 714 CTCCTGtttttttCA----AAGAGAATGTTTGTGACTGTTAAGATGTTGAATTTCGATTA 769
| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 694 CGCCTGTTTTTTTTTTTGTAAGAGAGTGTTTGTGGCTGTTAAGATGTTGAATTTCGATTA 753
Query 770 TGCAGATGATAAACAGCCAGTAATGTATTCAAATTCATAAGTTATTTCGCCGTAGATGCT 829
|||||| ||||||||||||||| || ||| | |||||||||||||||||| ||||||||
Sbjct 754 TGCAGACGATAAACAGCCAGTATTGAATTGTA-TTCATAAGTTATTTCGCCATAGATGCT 812
Query 830 TATAAAAGTTCAA 842
|||||||||||||
Sbjct 813 TATAAAAGTTCAA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5