BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64685.1

Length=2031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332687 jgi|Araly1|332687|fgenesh1_pm.C_scaffold_8002030           309    5e-83
  Ahg496683 jgi|Araly1|496683|fgenesh2_kg.8__2499__AT5G64680.1         165    1e-39


> Ahg332687 jgi|Araly1|332687|fgenesh1_pm.C_scaffold_8002030
Length=288

 Score =  309 bits (167),  Expect = 5e-83
 Identities = 191/203 (94%), Gaps = 0/203 (0%)
 Strand=Plus/Plus

Query  1634  GCTGTGGCGCGAGTTTTGTGGTTGAGATTATCTCGGAACAGTTTGAGGGGAAGAGATTGC  1693
             |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct  86    GCTGTGGCGCGAGTTTTGTGATTGAGATTGTCTCAGAACAGTTTGAGGGGAAGAGATTGC  145

Query  1694  TCGAGAGGCACCGTATTGTGAACGCTGCTCTTGAAGAAGAGATGAAAGAAATCCATGCTC  1753
             |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  146   TCGAGAGGCATCGCATTGTGAACGCTGCTCTTGAAGAAGAAATGAAAGAAATCCATGCTC  205

Query  1754  TCTCGATAACGAAAGCTCAAACTCCGCAACAATGGAAGCCAATATCACAAGACTCTGCAA  1813
             |||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  206   TCTCTATAAAGAAAGCTCAAACTCCACAACAATGGAAGCCAGTATCACAAGACTCTGCAA  265

Query  1814  CAACTCCAACCACAGAGGCTTGA  1836
             |||||||| ||||||| ||||||
Sbjct  266   CAACTCCATCCACAGAAGCTTGA  288


> Ahg496683 jgi|Araly1|496683|fgenesh2_kg.8__2499__AT5G64680.1
Length=825

 Score =  165 bits (89),  Expect = 1e-39
 Identities = 112/123 (91%), Gaps = 1/123 (1%)
 Strand=Plus/Minus

Query  1909  TTGAACTTTTATAAGCATCTACGGCGAAATAACTTATGAATTTGAATACATTACTGGCTG  1968
             ||||||||||||||||||||| |||||||||||||||||||   ||| || |||||||||
Sbjct  825   TTGAACTTTTATAAGCATCTATGGCGAAATAACTTATGAATAC-AATTCAATACTGGCTG  767

Query  1969  TTTATCATCTGCATAATCGAAATTCAACATCTTAACAGTCACAAACATTCTCTTTGaaaa  2028
             |||||| ||||||||||||||||||||||||||||||| |||||||| ||||||  ||||
Sbjct  766   TTTATCGTCTGCATAATCGAAATTCAACATCTTAACAGCCACAAACACTCTCTTACAAAA  707

Query  2029  aaa  2031
             |||
Sbjct  706   AAA  704



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 76370941225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5