BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64690.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496685 jgi|Araly1|496685|fgenesh2_kg.8__2501__AT5G64690.1 1611 0.0
> Ahg496685 jgi|Araly1|496685|fgenesh2_kg.8__2501__AT5G64690.1
Length=1277
Score = 1611 bits (872), Expect = 0.0
Identities = 1166/1298 (90%), Gaps = 59/1298 (5%)
Strand=Plus/Plus
Query 1 ACCTTCGTTTTCAGCATTTCTCTCTCTAATCTATCGGAAGATAAAAGGCAAATTAAGAGA 60
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1 ACCTCCGTTTTCAGCATTTCTCTCTCTAATCTCTCGGAAGATATAAGGCAAATCAAGAGA 60
Query 61 GAGAAAATATTTTTTCTCATAATCTGTGTTAACGTACGAGATGGGAAACTGTGCCATCAA 120
||| || | || || | | || ||||||||||||||||||||||||||
Sbjct 61 GAG--AA-A---------AT-AT-T-T-TT----TACGAGATGGGAAACTGTGCCATCAA 100
Query 121 GCCAAAGGTTCTCAAAGATTCTGACGAGGATCTTGTTCCGGTGGAGCGAGAGACGACGGT 180
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 101 GCCAAAGGTTCTCAAAGATTCTGACGAGGATCTGGCTCCGGTGGAGCGAGAGACGGCGGT 160
Query 181 TCCGACTGATCTTGACAAAGATCCGGC-GCAGAAGAACGAGAACATCATTTCTCCTAACG 239
|| | |||||| |||||| |||||||| | |||||| ||||||| ||||| |||||||||
Sbjct 161 TCTGGCTGATCATGACAAGGATCCGGCTG-AGAAGAGCGAGAACGTCATTGCTCCTAACG 219
Query 240 CTGCGGAGGAAGCTGCGGCTGCGGCACGACGGAGCGAGAAGGGAAAAGAGATTTTGATTG 299
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 220 CTGCGGAAGAAGCTGCCGCTGCTGCACGACGGAGCGAGAAGGGAAAAGAGATTTTGATTG 279
Query 300 AAGATGACATTGAAGATCAACC-CAAGCGCCCATCTCTTAGTCACTTGTTTCATGAGGAC 358
|||||||| |||| ||||| || ||| ||||| |||||||||||||||||||||||||||
Sbjct 280 AAGATGACGTTGATGATCA-CCACAAACGCCCTTCTCTTAGTCACTTGTTTCATGAGGAC 338
Query 359 AAGACAGTAGTGGAAAAAGAAGTAACCGATCTAACTCCGACAAAACCAGACACCAATAAC 418
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 339 AAGACAGTAGTCGAAAAAGAAGTAACTGATCTAACTCCGAGAAAACCAGACACCAATAAC 398
Query 419 AAAACCGGTCCTTCTTCAGAGGTTTCAATGTTTGATACTACTGCTTTAGTGGCTTCTAAT 478
|||||| |||||||||||||| |||||| | |||||||||||||||||| |||||| |||
Sbjct 399 AAAACCAGTCCTTCTTCAGAGATTTCAAAGCTTGATACTACTGCTTTAGGGGCTTCGAAT 458
Query 479 GCCAAAGATCCAGAAGATATC-TTTGACGTTCAGACTCGAAATGACCTCGAAGTTAAGAT 537
| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||
Sbjct 459 GTCAAAGATCCAAAAGA-ACCATTTGACGTTCAGACTCGAGATGACCTCGAAGTTAAGAT 517
Query 538 TCCAAAAGATTCTGATGTTAAGACTCCTGAAACTCCTAAAGCTAATGAAGCTGAAGATAA 597
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 518 TCCAAGAGATTCTGATGTTAAGACTCCTGAAACTCCTAAAGCTAAGGAAGCTGAAGAAAA 577
Query 598 CTTTTCAGAGAGTTGGGAAGTTAAGTTTCCAGAGGAATTGGAAGCTAAGAAGACATCTGA 657
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 578 CTTTTCAGAGAATTGGGAAGTTAAGTTTCCAGAGGAGTTGGAAGCTAAGAAAACATCTGA 637
Query 658 AGTTGTTAAGGTTGCAGAAGAGTCGAAAGTTCCAGAA------G---TTTCTGCTCCTGA 708
|| ||||||||||| ||||||||| ||| |||||||| | |||||||||||||
Sbjct 638 AGCTGTTAAGGTTGTAGAAGAGTCAAAACTTCCAGAAACTTATGAGGTTTCTGCTCCTGA 697
Query 709 ATTGTCTGAAATTAAGGTTACAAAAGAATCAGATGTTCCTGAAGTCTTGGAGGACAAGAA 768
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||
Sbjct 698 ATTGTCTGAAATTAAGGTTACAAAAGGATCAGGTGTTCCTGAAGTCTTGGTGGATAAGAA 757
Query 769 TATCCCAGAAGTTGTTGAAGTGAAGACTGATGAAGTTAAAGTCGCAGAGTCAGAACTTCT 828
||| ||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 758 TATTCCAGAAGTTCCGGAAGTCAAGTCTGATGAAGTTAAAGTTGCAGAGTCAGAACTTCT 817
Query 829 AAAGGTTTCAGAAGTTGAAGCAACAGAGGATTTAGAGATTAAAGTTCCAAAAGTCTTTGA 888
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 818 AAAGGTTTCAGAAGTTGAATCTACAGAGGATTTAGAGATTAAAGTTCCAAAAGTTTTTGA 877
Query 889 AGCCAAGACTCCTGAAACATCGAACGTTAAGGTTACAGGTGAAGCAGAGGTAAAGACTGA 948
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 878 AGCCAAGACTCCTGAAACATCGAACGTTAAGGTTACAGATGAAGCAGAGGTAAAGACTGA 937
Query 949 TCAACGAGTGGAAGTTGAGGTCGCAGATGAC-AAAA--AGGTTCCAGAGTTTGTGGATGC 1005
||||||| |||||||||||||| |||| || |||| ||||||||||||||||||||||
Sbjct 938 TCAACGATTGGAAGTTGAGGTCACAGAAGAAGAAAAGGAGGTTCCAGAGTTTGTGGATGC 997
Query 1006 TAAAGAAAAGATCGACAAATCTGATCAAGACAAAGAGATTGTGTTGCCTAAAACAGAGGA 1065
|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 998 TAAAGAGAAGATCGAAAAATCTGATCAAGACAAAGAGATTGTGTTGCCTAAACCAGAGGG 1057
Query 1066 AGAAGGGAAAGATGTGTCTTTGGAGAAGCAAGTCAAAGAGTCTACATTGTCTGATTTAGG 1125
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGCAGAAAAAGATGTGTCTTTGGAGAAGCAAGTCAAAGAGTCTACATTGTCTGATTTAGG 1117
Query 1126 AAACAAATGAGTTACAAGAGAGACTA-CAGAGAAATTACCAATCAGGAGTAGCTAAAATT 1184
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 1118 AAACAAATGAGTTACAAGAGAAAC-AGCAGAGAAATTACCAATCAGGAGTAGCTAAAATG 1176
Query 1185 ATAtttttttCGACCATGTCATGGTTTTTATaaaacaaaacaaaaaaCGATTTAGCATTC 1244
|||||||||| | | || | ||| |||||||||||||||||||||||||
Sbjct 1177 ATATTTTTTT------T-T-AT-------A-AAA-CAAAACAAAAAACGATTTAGCATTC 1219
Query 1245 TTTAGGCAATTTCAGTTTGTGTATGTTTCTTTATTGTT 1282
|||||||||||||||||||||| || |||||||||||
Sbjct 1220 TTTAGGCAATTTCAGTTTGTGT--GTCTCTTTATTGTT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5