BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64700.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951307 jgi|Araly1|951307|scaffold_803194.1 1764 0.0
> Ahg951307 jgi|Araly1|951307|scaffold_803194.1
Length=1121
Score = 1764 bits (955), Expect = 0.0
Identities = 1064/1118 (95%), Gaps = 1/1118 (0%)
Strand=Plus/Plus
Query 63 AAACATCATCAAATCGGTAGATGGACATGGAGTCGAAGAAACCATATCTGATGGTTACTA 122
|||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1 AAACATCATCAAATCGATCGATGGACATGGAGTCAAAAAAACCATATATGATGGTTACTA 60
Query 123 TAATACAAGTCATATATACAATCATGTTCTTGATCTCCAAAGCCGTCTTCAACGGTGGAA 182
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 61 TAATACAAGTCATATATACAATCATGTTCTTGATCTCTAAAGCCGTCTTCAATGGTGGAA 120
Query 183 TGAACACTTTCGTCTTTGTTTTCTATCGTCAAGCTTTCGCTACCATCTTCTTGGCTCCTC 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAACACTTTCGTCTTCGTTTTCTATCGTCAAGCTTTCGCTACCATCTTCTTGGCTCCTC 180
Query 243 TGGCTTTCTTCTTTGAGCGGAAAAGTGCTCCACCTCTTTCATTTGTGACCTTCATCAAGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCTTTCTTCTTTGAGCGGAAAAGTGCTCCACCTCTTTCATTTGTGACCTTCATCAAGA 240
Query 303 TCTTCATGCTCTCTTTATTTGGTGTGACATTGAGCTTGGACTTAAACGGTATCGCATTAT 362
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TCTTCATGCTCTCTTTATTTGGTGTGACATTGAGCTTAGACTTAAACGGTATCGCATTAT 300
Query 363 CATACACGTCGGCAACTTTAGCCGCCGCCACAACAGCTTCCCTTCCGGCCATCACATTCT 422
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 301 CATACACGTCGGCGACTTTAGCCGCGGCCACAACAGCTTCCCTTCCTGCCATCACATTCT 360
Query 423 TCTTGGCTCTTTTATTTGGAATGGAGAGGCTTAAGGTTAAGAGCATACAAGGAACAGCAA 482
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTGGCTCTCTTATTTGGAATGGAGAGGCTTAAGGTTAAGAGCATACAAGGAACAGCAA 420
Query 483 AGCTTGTGGGGATTACTGTGTGCATGGGAGGGGTAATTATCTTAGCTATTTACAAAGGTC 542
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 421 AGCTTGTGGGGATTACTGTGTGCATGGGAGGGGTAATTACCTTAGCTCTTTACAAAGGTC 480
Query 543 CATTACTGAAATTACCTTTATGCCCTCATTTTTACCACGGCCAAGAACATCCTCACCGGA 602
|| |||||||| |||||||||| |||||||| || || |||||||| |||||||||| |
Sbjct 481 CACTACTGAAAGTACCTTTATGTCCTCATTTCTATCATGGCCAAGAGCATCCTCACCATA 540
Query 603 ATAATCCCGGCCACGTCTCCGGCGGTTCCACCTCGTGGCTCAAAGGATGTGTCCTCATGA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 ATAATCCCGGCCACGTCTCCGGCGGTTCCACCTCGTGGCTCAAAGGATGTGTCCCCATGA 600
Query 663 TAACCTCCAACATTCTATGGGGTCTCTGGCTCGTTTTACAGGGTCGTGTGTTGAAGGTTT 722
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCACCTCCAACATTTTATGGGGTCTCTGGCTCGTTTTACAGGGTCGTGTGTTGAAGGTTT 660
Query 723 ATCCTTCGAAGCTATATTTCACAACTCTTCATTGTCTATTGAGTTCCATTCAATCATTCG 782
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 661 ACCCTTCGAAGCTATACTTCACAACTCTTCATTGTCTATTGAGTTCGATTCAATCCTTCG 720
Query 783 TCATCGCGATTGCTTTAGAGAGAGATATTTCAGCATGGAAGCTTGGTTGGAACCTAAGAC 842
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TCATCGCGATTGTTTTAGAGAGAGATATTTCAGCTTGGAAGCTTGGTTGGAACCTAAGAC 780
Query 843 TCGTTGCAGTCATTTACTGCGGATTCATTGTAACAGGCGTAGCATATTATTTGCAATCAT 902
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 781 TCATTGCAGTCATTTACTGTGGATTCATAGTAACAGGCGTAGCATATTATTTGCAATCAT 840
Query 903 GGGTTATAGAAAAGAGAGGACCTGTCTTCTTATCAATGTTTACTCCTTTGTCTCTCCTCT 962
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 841 GGGTTATAGAAAAGAGAGGACCTGTCTTCTTATCAATGTTCACTCCTTTGTCTCTCCTTT 900
Query 963 TCACTCTCCTCTCTTCAGCGATTCTCTTGTGCGAGATCATCAGTCTTGGAAGTATTGTAG 1022
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCACTCTTCTCTCTTCAGCGATTCTCTTGTGCGAGATCATCAGTCTTGGAAGTATTGTAG 960
Query 1023 GTGGATTATTATTGATCATAGGACTTTACTGTGTGCTGTGGGGGAAAAGCAGAGAGGAGA 1082
||||||| || ||||| |||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 961 GTGGATTGTTGTTGATTATAGGACTCTACTGTGTGTTGTGGGGGAAAAGCAAAGAGGAGA 1020
Query 1083 AAAACAGTGGTGATGATAAGATTGATTTACAGAAGGAAAACGATGTCGTGTGCAATGAAG 1142
|||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 1021 AAAACAGTGGCGATGATAAGACTGATCTACAGAAGGAAAATGATGTCGTGTGCAATGAAG 1080
Query 1143 TGAAGGTTGTCATTAGTTGAAT-AATGTGTTAtttttt 1179
||||||| ||| ||||||||| ||||||||| |||||
Sbjct 1081 TGAAGGTCGTCGTTAGTTGAAAGAATGTGTTAATTTTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5