BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64710.1
Length=2771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951308 jgi|Araly1|951308|scaffold_803195.1 3114 0.0
Ahg487806 jgi|Araly1|487806|fgenesh2_kg.6__940__AT5G09840.1 451 1e-125
> Ahg951308 jgi|Araly1|951308|scaffold_803195.1
Length=2624
Score = 3114 bits (1686), Expect = 0.0
Identities = 2336/2637 (89%), Gaps = 95/2637 (4%)
Strand=Plus/Plus
Query 94 TTCCTTGAGATAATCATGCAATTCG-GATCTTCCAAAACCCTCTTCTTCCGCGTCGCCGG 152
|||| ||||| |||||||||||||| | ||| ||||| | |||||| ||||| |||||||
Sbjct 7 TTCC-TGAGAAAATCATGCAATTCGCG-TCTACCAAATCACTCTTCCTCCGCCTCGCCGG 64
Query 153 TTTCTCTTCCACCTCCGTCTTCAAGCCGCGTCGCGCGATCTCTGTTCCGGTCGGAAATTT 212
|||||||||||| |||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct 65 TTTCTCTTCCACATCCGTCTTCAAGCCGCCTCGCGCGATCGCTGTTCTGGTCGCAAATTT 124
Query 213 TTCTTCTTCTAGCTCGATTTCC-GCTCACTACACTTCTTTGAAGCGTTC-TCAATACGAG 270
||||||||||||||||| ||| || |||| ||||||||||| ||| || |||||||||
Sbjct 125 CTCTTCTTCTAGCTCGATCTCCGGC-CACTTCACTTCTTTGAGGCG-TCATCAATACGAA 182
Query 271 GAAGATTCACGGAGTGTTAGGGTCCCTGTATGGTGGGATTTTGAGAACTGCCATTTGCCG 330
|| || || |||||||||||||| | ||||||||||||||| |||||||| |||||||||
Sbjct 183 GAGGAGTCGCGGAGTGTTAGGGTTCATGTATGGTGGGATTTCGAGAACTGTCATTTGCCG 242
Query 331 TCGGGTGCAAATGTCTTCAAATTGGCTCAAACCATCACATCCGCCGTTAGAATCTGTGGA 390
|||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 243 TCGGGTGCGAATGTCTTCAAATTGGCTCAAACCATCACATCCGCCGTTAGATTCAGCGGA 302
Query 391 ATCAAAGGACCCATCACCATCACTGCCTACGGAGACATGATCCAGCTCTCCAGAACTAAC 450
||||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||||
Sbjct 303 ATCAAAGGACCCATCACCATCACAGCCTTCGGAGACTTAATCCAGCTCTCCAGAACTAAC 362
Query 451 CAAGAAGCTCTCTTCGCTACTGGAATCAATCTCACCCATGTCCCTCAAGGTGGGAAGAAC 510
|||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 363 CAAGAAGCTCTCTTTGCCACTGGAATCAATCTCACTCATGTTCCTCAAGGTGGGAAGAAC 422
Query 511 AGTACGGATAGATCTTTGATAACAGAAATAATGTGTTGGGTTTCACAGAATCCACCTCCA 570
|||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||
Sbjct 423 AGTACGGATAGATCTTTGATTACAGATCTAATGTATTGGGTTTTACAGAATCCACCTCCT 482
Query 571 GCTCATCTCTTCCTTATCTCTAGTGATAGCGATTTCGCGAATGTGCTACATAGATTGAGG 630
|||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 483 GCTCATATCTTCCTTATCACTAGTGACAGAGATTTCGCGAATGTGCTACATAGATTGAGG 542
Query 631 ATGAGGAATTACAACATTTTGCTCGCGTGCTACGAAGAAACG-ACGCTTGGTGTATTGTG 689
|||| ||||||||||||||||||||| | ||||||| || | |||| ||||||||||||
Sbjct 543 ATGAACAATTACAACATTTTGCTCGCGGGGTACGAAG-AAGGTACGCATGGTGTATTGTG 601
Query 690 CAGTGCTGCTTCGATTATGTGGGATTGGGATGCTTTAGTTAGAGGGCAAAATCCAACTGC 749
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 602 TAGTGCTGCTTCGATTATGTGGGATTGGGATGCTTTAGTTAGAGGGAAAAATCCAACGGG 661
Query 750 TAAACATTTTAATCAGCCACCTGATGGTCCTTATCATTCTTGGTATGGTCACTATACAAC 809
|||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||
Sbjct 662 TAAATATTACAATCAGCCACCGGATGGTCCTTATAATTCTTGGTATGGTCACTATAGAAC 721
Query 810 TCCTCTTCTTGACCCATTTGCCACATC-T--ACCA--A-TAATAAGCAGATATCTTCTAC 863
|||||||||||||||||||||| |||| | |||| | || ||||| ||||||| |||
Sbjct 722 TCCTCTTCTTGACCCATTTGCCTCATCTTCCACCACTACCAACAAGCAAATATCTTGTAC 781
Query 864 TAGTGTCAAAACCGTAGA----G-T---T-G----C---T----CGAATT-GGGTTCTTC 902
|||||| |||||| |||| | | | | | | |||||| |||||||||
Sbjct 782 TAGTGTGAAAACCATAGAGTTGGTTGAATCGAATTCAAATGCGACGAATTCGGGTTCTTC 841
Query 903 TAAGTCTCGTCGTCCTATTCCGAATA-AAGTTGTTAAGCAGATTGGTTTGATATTGAGGT 961
|||| || ||| |||||||||||| | ||||||||||||||||||||||||| ||||| |
Sbjct 842 TAAGGCTTGTCTTCCTATTCCGAA-AGAAGTTGTTAAGCAGATTGGTTTGATTTTGAGTT 900
Query 962 GGTATCCTAAGGGAGCAGCCATTACAGAACTCCGTGAGCAGCTGCGAAAGAGGAAAGTAC 1021
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 GGTATCCTAAGGGAGCACCCATTACAGAACTCCGTGAGCAGCTGAGAAAGAGGAAAGTAC 960
Query 1022 TGTTAGATAGAGACTTTTACGGATATAAGAGTTTTTCGAGGTTTCTGTTATCTATGCGGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 ACTTAGATAGAGACTTTTACGGATATAAGAGTTTTTCGAGGTTTCTGTTATCTATGCCGA 1020
Query 1082 ATATCTTACAGGTTGTTCCTCTGGGAGATGGTATGTTTTCTATTCATGCTGTTACCCAGG 1141
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGATCTTACAGGTTGTTCCAGTGGGAGATGGTATGTTTTCTATTCATGCTGTTACCCAGG 1080
Query 1142 GAATGGATAATAAAGCCTTATTGCCAAAAGTAAGTTGCGAGAATCATGCAGTTGTTAGTG 1201
||||| |||| ||||||| || || || |||||| | |||||||| | ||||||||||
Sbjct 1081 GAATGAATAACAAAGCCTCATCACCGAATGTAAGTAGTGAGAATCACGAAGTTGTTAGTT 1140
Query 1202 TGGAAAAGATGTGTCAGAATATGAAACAGAATGAT-AAAGATGTCAAAGAGGAATCTCAT 1260
|||| ||||||||| || ||||||||||||||||| ||| |||||||||||||| || |
Sbjct 1141 TGGACAAGATGTGTGAGGATATGAAACAGAATGATGAAA-ATGTCAAAGAGGAA--TC-T 1196
Query 1261 CAATTACAAGAGAGTTCTCAAGAGTTTGTTCAGGTAATGAAG-CTGATGGATGTTAAGGC 1319
|||| |||||||| ||||||||||| |||||||||||| || | |||||||||||||||
Sbjct 1197 CAATCACAAGAGAATTCTCAAGAGTCTGTTCAGGTAAT-TAGACAGATGGATGTTAAGGC 1255
Query 1320 AAAAGAGGAACCAGTTAAAGCAAATCAGCTAGCTATAACTGCTGTTGATGATGTTTCTTC 1379
||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||| |
Sbjct 1256 AAAAGAGGAACCAGTTAAAACAACTCAGCTAGCTTTAACTGTTGTTGATGATGTTTCTCC 1315
Query 1380 TTTCGAGGAAAAAGACGGATTTCTTAAGAAGCTAAATAGACTATTGTTTGGTTCACCTG- 1438
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 TTCCGAGGAAAAAGACGGATTTCTTAAGAAGCTAAATAGACTATGGTTTGGTTCACCTGA 1375
Query 1439 AA-A-TGGAATTAGAGCATCTCCAAGAAAGGAAACATATTTCCGGAAAT----------- 1485
|| | ||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 1376 AATAGTGGAATTAGAGCATCTCGAAGAAAAGAAACATATTTCTGGAAATGGAGACGAAGG 1435
Query 1486 ----GGAGTTCTTGGTGAAGGAAAAGTGGTGGATAAGGACTTAGAATCTCAAATTGCATC 1541
|||||| ||||||||| |||||||||| ||| ||| |||||||||| |||||||||
Sbjct 1436 GAAAGGAGTTGTTGGTGAAGAAAAAGTGGTGAATACGGATTTAGAATCTCGAATTGCATC 1495
Query 1542 TTCTACCTCTAGTGAATCTGCTGAGGAGGTAAAAGTAGACAATGCAGTAGGCAACGGGAA 1601
||||||||||||||||||||||||||| || |||| ||||| || ||| |||||| |||
Sbjct 1496 TTCTACCTCTAGTGAATCTGCTGAGGAAGTTAAAGCAGACACTGAAGTTGGCAACAAGAA 1555
Query 1602 ATCTAAGAGTCCA-GG-GCTTACATGTCGACTTCTGAAGAGATTCAAGTTTTCTTGGGGA 1659
||||||||||||| || |||| | |||||||||||| |||||||| |||||||||||||
Sbjct 1556 ATCTAAGAGTCCATGGCTCTTA-A-GTCGACTTCTGAGGAGATTCACGTTTTCTTGGGGA 1613
Query 1660 AGATATACAGAGCTTAGCAATGCAGCAGCAACCGGACCTCAAGTTGATGACGTTTTTGTT 1719
|| ||| |||||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |
Sbjct 1614 GGAAATATAGAGCTTAGCAATGCAACAGTAACTGGACCTCAAGTAGATGATGTTTTTGCT 1673
Query 1720 AAAGATTCTTTTTGGAATGATGTTGAATCTTTCATTAATTCTCCAAGAGGCTTCGTCGC- 1778
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1674 AAAGATTCTTTTTGGAAGGATATTGAATCTTTCATTAATTCTCCAAGAGGCTTCGTC-CT 1732
Query 1779 TGTTTCTCACTCAAGATCAAGAGAAACAATGGCTAAGAATCTTAAGGAAGAAGGACCTTC 1838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1733 TGTTTCTCACTCAAGATCAAGAGAAGCAATGGCTAAGAATCTTAAGGAAGAAGGACCTTC 1792
Query 1839 ATCACTCAAACCGCTCGATGTACCAAAAATGCTTGATTTAATATCTATGTTAATATCAGA 1898
||| |||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1793 ATCTCTCAAACCGCTCAATGTATCAAAAATGCTTGATTTAGTATCAATGTTAATATCAGA 1852
Query 1899 GAAGAAATGGATCCAAGAGAATCCTTCGGATGCTCTACCTTTTAGAGTAACTCGGTTCAC 1958
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1853 GAAGAAATGGATCCAAGAGAATCCTTCTGATGCTCTACCTTTTAGAGTAACTTGGTTCAC 1912
Query 1959 TGAGGAAAGCTCTTGTCGTAGCAACCCTCGCACC-ACGGATGGATTGAGAGCGATATTTG 2017
||| |||||||||||| ||||||||||| | | ||||| ||||||||| |||||||||
Sbjct 1913 CGAGAAAAGCTCTTGTCTTAGCAACCCTC-CTGCTACGGAGGGATTGAGATCGATATTTG 1971
Query 2018 TGAATATGTCAGAATCGCTGTGTGACGGAGCAAATGGTGATAAAAAT-TCCACCAACGTT 2076
||||||||||| |||| ||||||||| |||||||||||| ||||| || | | ||||
Sbjct 1972 TGAATATGTCAAAATCATTGTGTGACGAAGCAAATGGTGAGAAAAAAATCAAGGA-CGTT 2030
Query 2077 GGTATGAGCCAGAAACCTAAAGAAAGATCGAGAAGCAAGGTAATTGCGGATTGTCATAAG 2136
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2031 GGTATGAGCCAGAAACCTAAAGAAAGATTGAGAAGCCAGGTAATTGCGGATTGTCATAAG 2090
Query 2137 CTGATAAAGAAGATAACAGAGGAAAA-CGCTGGAGGTTATAGCATAACTAAATTCAAGAA 2195
|||||||||||||||| ||||||||| | |||||||||||| ||| | ||| ||||||||
Sbjct 2091 CTGATAAAGAAGATAAGAGAGGAAAATC-CTGGAGGTTATAACATGAGTAACTTCAAGAA 2149
Query 2196 AGCCTTTTTGGAGAAATTTGGATACCGTTTAGAATATCGTAAATTCGGTTTTTCGAAACT 2255
|| |||||||| |||||||||||||| |||||| ||| ||| |||||| | |||||||
Sbjct 2150 AGACTTTTTGGTCAAATTTGGATACCGCTTAGAACATCATAACCTCGGTTATCCGAAACT 2209
Query 2256 GCAGTCTTTGATAGAAATGATGCCC-GAGGCTAGGATTGAATCAGGGCACATTGTTACTT 2314
|||||| |||||| ||||||| ||| |||||||||||||||||||| |||||||| |||
Sbjct 2210 GCAGTCGTTGATACAAATGAT-CCCTGAGGCTAGGATTGAATCAGGATACATTGTTCCTT 2268
Query 2315 CGTCAACCCCGGTTCCATGTGAATCTGATTCATCATTCGAAGATCTCGGTCCAGTTTCCA 2374
|||| ||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||
Sbjct 2269 CGTCCACCCCGGTTCCATATGAGTCTGATTCATTATTCGAAGATCTTGGTCCAGTTTCCA 2328
Query 2375 AAAAGATTCATGAGAATGAGTCATCTGTTTCAGAGGGAGAAGATTATGACTCAGAGATGG 2434
||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||| |
Sbjct 2329 AAAAGGTTCATGAGAATGAGTCATCTGTTTCAGAGGAAGAAGAGTATAACTCAGAGACAG 2388
Query 2435 AGGAAAAAGCTTC-TTCAAAACAGAGCGGTGGGGAAAGGAAGAAGAA-A-GAA-GA---T 2487
| ||| ||||||| || |||||||||||| | ||||||||||||||| | ||| || |
Sbjct 2389 ACGAAGAAGCTTCATT-AAAACAGAGCGGCGAGGAAAGGAAGAAGAAGAAGAAAGAAGAT 2447
Query 2488 GAAACAGAGAGTGATTTACTTCAAATTCTGGGTTCTTGGGACACTGATAAGAAGC----- 2542
||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2448 GAAACAGAGTGCGATTTACTACAAATTCTGGGTTCTTGGGACACTGATAAGAAGCAAAAG 2507
Query 2543 ----CTGCAAAAACTTTTGGTGAAGATAAGCTTGTTGAGGGAATATTGATGAGCTTGAGG 2598
|||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 2508 AAGTCTGCAAAAACTTTTGGTGAAGATAAGCTTGTTGAAGGAATATTGTTAAGCTTGAGG 2567
Query 2599 AAGAAACCATCAGGTGACTCTAGGATTCAAGATTGAAGA-TGTTTAATTTAACCGGG 2654
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2568 AAGAAACCATCAGGTGACTCTAGGATTCAAGATTGAAGAATGTTTAATTTAACCGGG 2624
> Ahg487806 jgi|Araly1|487806|fgenesh2_kg.6__940__AT5G09840.1
Length=2765
Score = 451 bits (244), Expect = 1e-125
Identities = 647/833 (78%), Gaps = 61/833 (7%)
Strand=Plus/Plus
Query 340 AATGTCTTCAAA-TTGGCTCAAACCATCACATCCGCCGTTAG-AATCTGTGGAATCAAAG 397
|||||||||||| || || ||| | ||||| |||| | || ||| | ||||||||||
Sbjct 273 AATGTCTTCAAAGTT-GCACAATCAATCACCGCCGCTATAAGAAAT-AGCGGAATCAAAG 330
Query 398 GACCCATCACCATCACTGCCTACGGAGACATGATCCAGCTCTCCAGAACTAACCAAGAAG 457
| || ||||| ||||| |||| ||| ||| | | |||||| ||||| | |||||||| |
Sbjct 331 GTCCAATCACAATCACAGCCTTCGGTGACGTTCTACAGCTCCCCAGATCAAACCAAGACG 390
Query 458 CTCTCTTCGCTACTGGAATCAATCTCACCCATGTCCCTCAAGGTGGGAAGAACAGTACGG 517
|||||| |||||||||||||| |||||| ||||| ||||||||||| ||||||||| | |
Sbjct 391 CTCTCTCCGCTACTGGAATCAGTCTCACTCATGTTCCTCAAGGTGGTAAGAACAGTGCTG 450
Query 518 ATAGATCTTTGATAACAGAAATAATGTGTTGGGTTTCACAGAATCCACCTCCAGCTCATC 577
||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||||||
Sbjct 451 ATAGATCTTTGATCACAGATCTTATGTGTTGGGTTTCTCAGAATCCACCACCAGCTCATC 510
Query 578 TCTTCCTTATCTCTAGTGATAGCGATTTCGCGAA-TGTGCTACATAGATTGAGGATGAGG 636
| || || |||||||| |||| || ||||| || |||| |||||||||||||||||||
Sbjct 511 TTTTGCTAATCTCTAGCGATAAAGAATTCGC-AAGTGTGTTACATAGATTGAGGATGAGC 569
Query 637 AATTACAACATTTTGCTCGCGTGCTACGAAGAAAC-GACGCTTGGTGTATTGTGCAGTGC 695
||||||||||||||||| | | | || || | | | | | |||||| ||||| |||||
Sbjct 570 AATTACAACATTTTGCTTGTGAG-TA--AATCATCTG-CTCCTGGTGTTTTGTGTAGTGC 625
Query 696 TGCTTCGATTATGTGGGATTGGGATGCTTTAGTT-AGAGG-GCAAAATCCAACTGCTAAA 753
|||||||||||||||||||||||||||||| | | | ||| | | | | || |||
Sbjct 626 TGCTTCGATTATGTGGGATTGGGATGCTTT-GATCAAAGGAG-AGTGTGTTAGTGGTAAG 683
Query 754 CATTTTAATCAGCCACCTGATGGTCCTTATCATTCTTGGTATGGTCACTATACAACTCCT 813
|||||||||||||| ||||||||||||||| | ||||||||||||||||||| | ||||
Sbjct 684 CATTTTAATCAGCCTCCTGATGGTCCTTATAACTCTTGGTATGGTCACTATAGGATTCCT 743
Query 814 CTTCTTGACCCATTTGCCACAT--CTACCAATAATAAGCAGATATCTTCTACTAGTG--- 868
|||||||| |||||||| | || |||||| || | |||| || | |||| | |||
Sbjct 744 CTTCTTGATCCATTTGC-A-ATTGCTACCACTACTGAGCA-AT--CGTCTAGT-GTGAAA 797
Query 869 -TC-AA-AACCGTA-GAGT-T-GCTCGAA-T-TGGGTTCTTCTAA-G-TCT---CGT-CG 914
|| || ||| | |||| | | ||| | | || | ||| || | | | | | ||
Sbjct 798 ATCGAAGAACTATCCGAGTCTAGTTCGGAGTCTGTGAA-TTCGAATGCTGTTAACCTTCG 856
Query 915 TCCTATTCCGAATA-AAGTTGTTAAGCA-GATTGGTTTGATATTGAGGTGGTATCCTAAG 972
||||||||| || | |||||||| | || |||| ||||||||||||| | ||||| |||
Sbjct 857 TCCTATTCCAAA-AGAAGTTGTTGA-CAAGATTCGTTTGATATTGAGTTTATATCCCAAG 914
Query 973 GGAGCAGCCATTACAGAACTCCGTGA-GCAGCTGCGAAAGAGGAAAGTA-CTGTTAGATA 1030
|| |||||||| |||||||| |||| | |||| ||||| || || | || ||||
Sbjct 915 GGGGCAGCCATAACAGAACTACGTGCTG-AGCTTATTAAGAGCAATTTAGCAATT-GATA 972
Query 1031 GAGACTTT-TACGGATATAAGA-GTTTTTCGAGGTTTCTGTTATCTATGCG-GAATATCT 1087
||| ||| || ||| |||||| ||||| ||| ||||||| |||| |||| || |||||
Sbjct 973 AAGA-TTTCTATGGACATAAGAAGTTTT-CGAAGTTTCTGCTATCCATGCCAGA-TATCT 1029
Query 1088 TACAGGTTGTTCCT-CTGGGAGATGG-TATGTTT-TCTATTCATGCTGTTACC 1137
||| ||||| | | || | || || | ||||| | |||||||||||| |||
Sbjct 1030 TACGGGTTGCTACAGCTAGT-GACGGCT-TGTTTAT-TATTCATGCTGTCACC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104557722525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5