BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64720.1 Length=468 Score E Sequences producing significant alignments: (Bits) Value Ahg951309 jgi|Araly1|951309|scaffold_803196.1 725 0.0 > Ahg951309 jgi|Araly1|951309|scaffold_803196.1 Length=506 Score = 725 bits (392), Expect = 0.0 Identities = 440/464 (95%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 1 ATGGCTACTAAATCTACTTCGAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC 60 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 22 ATGGCCACTAAATCTACTTCCAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC 81 Query 61 ATATCGACCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGTTCACGAAGATG 120 ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | || Sbjct 82 ATATCGATCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGATCACGACGCTG 141 Query 121 GCTACGGATCATTCCGGCGCCGGAAACTTGATGGACTGTTGGAACGCGGGGTTGGAGCTT 180 |||| ||| |||||||||||||||||||| ||||| |||||||||||||| || |||||| Sbjct 142 GCTAAGGACCATTCCGGCGCCGGAAACTTAATGGATTGTTGGAACGCGGGTTTAGAGCTT 201 Query 181 AAGTCATGCACCGATGAGATTGTCAAGTTTTTCCTTAGTCAAACCGGTACGAGTGAACCG 240 |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 202 AAGTCATGCACCGACGAGATTGTCAAGTTCTTCCTTAGTCAAACCGGTACGACTGAACCG 261 Query 241 CCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 GCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT 321 Query 301 TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAACTTGAGA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 322 TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAATTTGAGA 381 Query 361 GAGTATTGTGAGTTTCAAGCTGAGAAGTCGGAATTATCTCCTTCACCGGCGCCGGAAACT 420 |||||||||||||||||||| |||||| |||| || ||||| || ||||||||||||||| Sbjct 382 GAGTATTGTGAGTTTCAAGCGGAGAAGCCGGAGTTGTCTCCGTCTCCGGCGCCGGAAACT 441 Query 421 TTGGCTTTGTCTCCGGTTGAGATAACGTATCCCGGACTTGATTA 464 ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 442 TTGGCTTTGTCTCCGGTTGAGATAACGTACCCCGGACTTGATTA 485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16941081516 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5