BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64720.1

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951309 jgi|Araly1|951309|scaffold_803196.1                        725    0.0  


> Ahg951309 jgi|Araly1|951309|scaffold_803196.1
Length=506

 Score =  725 bits (392),  Expect = 0.0
 Identities = 440/464 (95%), Gaps = 0/464 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTACTAAATCTACTTCGAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC  60
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGGCCACTAAATCTACTTCCAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC  81

Query  61   ATATCGACCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGTTCACGAAGATG  120
            ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct  82   ATATCGATCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGATCACGACGCTG  141

Query  121  GCTACGGATCATTCCGGCGCCGGAAACTTGATGGACTGTTGGAACGCGGGGTTGGAGCTT  180
            |||| ||| |||||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct  142  GCTAAGGACCATTCCGGCGCCGGAAACTTAATGGATTGTTGGAACGCGGGTTTAGAGCTT  201

Query  181  AAGTCATGCACCGATGAGATTGTCAAGTTTTTCCTTAGTCAAACCGGTACGAGTGAACCG  240
            |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  202  AAGTCATGCACCGACGAGATTGTCAAGTTCTTCCTTAGTCAAACCGGTACGACTGAACCG  261

Query  241  CCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT  300
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  262  GCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT  321

Query  301  TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAACTTGAGA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  322  TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAATTTGAGA  381

Query  361  GAGTATTGTGAGTTTCAAGCTGAGAAGTCGGAATTATCTCCTTCACCGGCGCCGGAAACT  420
            |||||||||||||||||||| |||||| |||| || ||||| || |||||||||||||||
Sbjct  382  GAGTATTGTGAGTTTCAAGCGGAGAAGCCGGAGTTGTCTCCGTCTCCGGCGCCGGAAACT  441

Query  421  TTGGCTTTGTCTCCGGTTGAGATAACGTATCCCGGACTTGATTA  464
            ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  442  TTGGCTTTGTCTCCGGTTGAGATAACGTACCCCGGACTTGATTA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16941081516


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5