BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64730.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951310 jgi|Araly1|951310|scaffold_803197.1 1555 0.0
Ahg905572 jgi|Araly1|905572|Al_scaffold_0003_2700 139 4e-32
> Ahg951310 jgi|Araly1|951310|scaffold_803197.1
Length=945
Score = 1555 bits (842), Expect = 0.0
Identities = 908/940 (97%), Gaps = 4/940 (0%)
Strand=Plus/Plus
Query 20 TTT-CAGGCGAGAGAGATGA--GC-GCGACGGAGCTGCCGACGAAGGAGGCACACATACT 75
||| |||||||||||||||| || ||| |||||||||||||||| ||||||||||||||
Sbjct 6 TTTCCAGGCGAGAGAGATGAGCGCGGCGGCGGAGCTGCCGACGAAAGAGGCACACATACT 65
Query 76 TAAAGGCCACGAGGGGGCGGTTTTAGCGGCGAGGTTTAACGGTGACGGAAACTACGCTCT 135
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 66 TAAAGGTCACGAGGGGGCGGTTTTAGCGGCGAGGTTTAACGGCGATGGAAACTACGCTCT 125
Query 136 CACCTGTGGCAAGGATCGAACTATCCGCCTCTGGAACCCGCACCGTGGAATCTTAATCAA 195
|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 126 CACCTGCGGCAAGGATCGAACCATCCGCCTCTGGAACCCACACCGTGGAATCTTAATCAA 185
Query 196 GACCTACAAATCTCATGGCCGCGAAGTCCGCGACGTTCATGTTACTTCAGACAATGCCAA 255
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GACCTACAAATCCCATGGCCGCGAAGTCCGCGACGTTCATGTTACTTCAGACAATGCCAA 245
Query 256 ATTTTGCTCATGTGGTGGTGATCGGCAAGTTTACTACTGGGATGTTTCAACTGGACGTGT 315
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 246 ATTTTGTTCATGTGGTGGTGATCGGCAAGTTTATTACTGGGATGTTTCAACCGGACGTGT 305
Query 316 AATCCGTAAATTCCGTGGTCATGATGGAGAGGTCAATGCAGTGAAGTTCAATGATTCGTC 375
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 306 AATCCGTAAATTCCGTGGTCACGATGGAGAGGTCAATGCAGTGAAGTTCAATGATTCGTC 365
Query 376 GTCTGTGGTTGTATCAGCTGGGTTCGATCGTTCGCTACGTGTATGGGACTGCAGATCTCA 435
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 366 GTCTGTAGTTGTATCAGCTGGTTTCGATCGTTCGCTACGTGTATGGGACTGCAGATCTCA 425
Query 436 CAGTGTTGAGCCAGTACAGATCATTGATACATTTTTGGATACAGTCATGTCTGTTGTTTT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CAGTGTTGAGCCAGTACAGATCATTGATACATTTTTGGATACAGTCATGTCTGTTGTTTT 485
Query 496 AACAAAGACTGAGATTATTGGTGGTAGTGTCGATGGAACAGTTCGCACATTTGACATGCG 555
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 486 AACAAAGACTGAGATTATTGGTGGTAGTGTCGATGGAACTGTTCGCACATTTGACATGCG 545
Query 556 TATCGGTAGGGAGATGTCAGATAACCTAGGCCAACCGGTTAACTGTATATCGATATCAAA 615
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 546 TATCGGTAGGGAGATGTCCGATAACCTAGGCCAACCGGTTAATTGTATATCGATATCAAA 605
Query 616 TGATGGAAACTGCGTTTTAGCTGGTTGCTTGGATTCTACTCTGCGTCTACTTGACAGGAC 675
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 606 TGATGGAAATTGCGTTTTAGCTGGTTGCTTGGATTCTACTCTGCGTCTACTTGACAGAAC 665
Query 676 CACAGGAGAGCTACTCCAAGTCTATAAAGGTCATATTTCCAAGTCATTTAAAACGGATTG 735
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CACAGGAGAACTACTCCAAGTCTATAAAGGTCATATTTCCAAGTCATTTAAAACGGATTG 725
Query 736 TTGCCTCACGAATTCGGATGCACATGTGATTGGAGGATCAGAGGATGGATTGGTTTTCTT 795
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTGCCTCACGAATTCTGATGCACATGTGATTGGAGGATCAGAGGATGGATTGGTTTTCTT 785
Query 796 TTGGGATTTGGTAGATGCAAAAGTGCTATCGAAATTTAGAGCTCACGATTTAGTGGTGAC 855
||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 786 TTGGGATTTGGTAGATGCAAAAGTGGTATCGAAATTTCGAGCTCATGATTTAGTGGTGAC 845
Query 856 AAGCGTGAGTTACCACCCGAAGGAAGACTGTATGTTGACTTCTTCGGTCGATGGTACAAT 915
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 846 AAGTGTGAGTTACCACCCGAAAGAAGACTGTATGTTGACTTCTTCGGTCGATGGTACAGT 905
Query 916 TCGTGTCTGGAAAAAATGAAGAAACAACAAATCTTGACTT 955
||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCGTGTCTGGAAAAAATGAAGAAACAACAAATCTTGACTT 945
> Ahg905572 jgi|Araly1|905572|Al_scaffold_0003_2700
Length=543
Score = 139 bits (75), Expect = 4e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 587 CAACCGGTTAACTGTATATCGATATCAAATGATGGAAACTGCGTTTTAGCTGGTTGCTTG 646
||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CAACCAGTTAATTGTATATTGATATCAAATGATGGAAACTGCGTTTTAGCTGGTTGCTTG 513
Query 647 GATTCTACTCTGCGTCTACTTGACAGG 673
||||||||| |||||||||||||||||
Sbjct 514 GATTCTACTATGCGTCTACTTGACAGG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5