BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64750.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496690 jgi|Araly1|496690|fgenesh2_kg.8__2506__AT5G64750.1 2185 0.0
> Ahg496690 jgi|Araly1|496690|fgenesh2_kg.8__2506__AT5G64750.1
Length=1456
Score = 2185 bits (1183), Expect = 0.0
Identities = 1374/1464 (94%), Gaps = 22/1464 (2%)
Strand=Plus/Plus
Query 1 TTCTAAAAtctctgtctttctttcttcctctttgtctctgtttcttgtttctctctctct 60
|||||||||||||||||||||||||| ||||||||||||| || || ||| | | |||||
Sbjct 1 TTCTAAAATCTCTGTCTTTCTTTCTTTCTCTTTGTCTCTG-TT-TT-TTTGT-T-TCTCT 55
Query 61 ctct-c-tACAGAGTTTTCTTTCCCTCGAAGAAAAAGAATATTTTTAAATTTAATTTTCT 118
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CTCTACATACAGAGTTTTCTTTCCCTCGAAGAAAAAGAATATTTTTAAATTTAATTTTCT 115
Query 119 CTGCGTTTATAAGCTTTAAGTTTCAGAGGAGGAGGATTTAGAAGGAGGGTTTTGTATGTG 178
||| ||||||||||||||||| || ||||||||||||||| ||||| || ||||||||||
Sbjct 116 CTGGGTTTATAAGCTTTAAGTCTCCGAGGAGGAGGATTTACAAGGAAGGATTTGTATGTG 175
Query 179 TGTCTTAAAAGTGGCAAATCAGGAAGATAACGTTGGCAAAAAAGCCGAGTCTATTAGAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 176 TGTCTTAAAAGTGGCAAATCAGGAAGATAACGTTGGCAAAAAAGCCGAGTCTACTAGAGA 235
Query 239 CGATGATCATCGGACGTTATCTGAAATCGATCAATGGCTTTACTTATTCGCAGCCGAAGA 298
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 236 TGATGATCATCGGACGTTATCTGAAATCGATCAATGGCTTTACTTCTACGCGGCCGAAGA 295
Query 299 CGACCACCACCGTCATAGCTTCCCTACGCAGCAGCCGCCTCCATCGTCG---TCGTCCTC 355
|||||||| |||||||| |||| ||||||| | ||| |||||||||||| ||||||||
Sbjct 296 CGACCACCTCCGTCATAACTTCGCTACGCACCCGCCTCCTCCATCGTCGTCCTCGTCCTC 355
Query 356 ATCTCTTATCTCAGGTTTCAGTAGAGAGATGGAGATGTCTGCTATTGTCTCTGCTTTGAC 415
||||||||| || |||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 356 ATCTCTTATGTCCGGTTTCAGTAGAGAGATGGAGACGTCTGCAATCGTCTCTGCTTTGAC 415
Query 416 TCACGTTGTTGCTGGAAATGTTCCTCAGCATCAACAAGGAGGCGGTGAAGGTAGCGGAGA 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCACGTTGTTGCCGGAAATGTTCCTCAGCATCAACAAGGAGGCGGTGAAGGTAGCGGAGA 475
Query 476 AGGGACTTCGAATTCGTCTTCTTCCTCGGGGCAGAAAAGGAGGAGAGAGGTGGAGGAAGG 535
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 476 AGGGACTTCGAATTCCTCTTCTTCCTCGGGACAGAAAAGGAGGAGAGATGTGGAGGAAGG 535
Query 536 TGGCGCCAAAGCGGTTAAGGCAGCTAATACTTTGACGGTTGATCAATATTTCTCCGGTGG 595
||| | ||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 536 TGGTGGCAAAGCGGTTAAGGCCGCTAATACTTTGACGGTTGATCAATATTTTTCTGGTGG 595
Query 596 TAGCTCTACTTCTAAAGTGAGAGAAGCTTCGAGTAACATGTCAGGTCCGGGCCCAACATA 655
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TAGTTCTACTTCTAAAGTGAGAGAAGCTTCGAGTAACATGTCAGGTCCGGGCCCAACATA 655
Query 656 CGAGTATACAACTACGGCAACTGCTAGTAGCGAAACGTCGTCGTTTAGTGGGGACCAACC 715
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 656 CGAGTACACAACTACGGCAACTGCTAATAGTGAAACGTCGTCGTTTAGTGGGGACCAACC 715
Query 716 TCGGCGAAGATACAGAGGAGTTAGACAAAGACCATGGGGAAAGTGGGCGGCTGAGATTCG 775
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 716 TCGGAGAAGATACAGAGGAGTTAGACAAAGACCTTGGGGAAAGTGGGCAGCTGAGATTCG 775
Query 776 AGATCCATTTAAAGCAGCTAGAGTTTGGCTCGGTACGTTCGACAATGCTGAATCAGCAGC 835
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 776 AGATCCGTTCAAAGCAGCTAGAGTTTGGCTGGGTACGTTCGACAATGCTGAATCAGCAGC 835
Query 836 AAGAGCTTACGACGAAGCTGCACTTCGGTTTAGAGGCAACAAAGCCAAACTCAACTTCCC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAGAGCTTACGACGAAGCTGCACTTCGGTTTAGAGGCAACAAAGCCAAACTCAACTTCCC 895
Query 896 TGAAAACGTCAAACTCGTTAGACCTGCTTCAACCGAAGCACAACCTGTGCACCAAACCGC 955
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 896 TGAAAACGTCAAACTCGTTAGACCTGCTTCAACCGAAGCACAACCTGTGCCCCAAACCGC 955
Query 956 TGCTCAAAGACCGACCCAGTCAAGGAACTCGGGTTCAACGACTACCCTTTTGCCCATAAG 1015
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 956 TGCTCAAAGACCGACCCAGTTAAGGAACTCGGGTTCTACAACTACCCTTTTGCCCATACT 1015
Query 1016 ACCTGCTTCGAATCAAAGCGTTCATTCGCAGCCGTTGATGCAATCATACAACTTGAGTTA 1075
||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1016 ACCTGCTTCAAATCAAACCGTTCATTCGCAGCCGCTGATGCAATCGTACAACTTGAGTTA 1075
Query 1076 CTCTGAAATGGCTCGTCAACAACAACAGTTTCAGCAACATCATCAACAATCTTTGGATTT 1135
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1076 CTCTGAAATGGCTCGTCAACAACAACAGTTTCAGCAATATCATCAACAATCTATGGATTC 1135
Query 1136 ATACGATCAAATGTCGTTTCCGTTGCGTTTCGGTCACACTGGAGGTTCAATGATGCAATC 1195
||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1136 ATATGATCAAATGTCGTTTCCGTTGCGTTTCGGTCACACCGGAGATTCAATGATGCAATC 1195
Query 1196 TACGTCGTCATCATCATCTCATTCTCGTCCTCTGTTTTCCCCGGCTGCTGTTCAGCCGCC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TACGTCGTCATCATCATCTCATTCTCGTCCTCTGTTTTCCCCGGCTGCTGTTCAGCCGCC 1255
Query 1256 ACCAGAATCAGCTAGCGAAACCGGTTATCTCCAGGATATACAATGGCCATCAGACAAGAC 1315
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1256 GCCAGAATCAGCTAGCGAAACCGGTTACCTCCAGGATATACAATGGCCATCAGACAAGAC 1315
Query 1316 TAGTAATAACTACAATAATAGTCCATCCTCCTGATGACTTGCTTCATTTT------ATTT 1369
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1316 AAGTAATAACTACAATAATAGTCCATCCTCCTGATGACTTGCTTCATTTTTTTTTTATTT 1375
Query 1370 GTTTCACTATAGAGTAATAGAAA-ACAGGAAAATGATTATATGTTATAGAGTTATTTTTC 1428
|||||||||||||||||||| | | |||| ||||||||||||||| |||| |||||
Sbjct 1376 GTTTCACTATAGAGTAATAGGGGGA-A--AAAACGATTATATGTTATAGGGTTACTTTTC 1432
Query 1429 C--AAATATTATAGGGTTTAGGTT 1450
| |||||||||||||||||||||
Sbjct 1433 CCCAAATATTATAGGGTTTAGGTT 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5