BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64760.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1 2218 0.0
Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1 1443 0.0
> Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1
Length=1378
Score = 2218 bits (1201), Expect = 0.0
Identities = 1320/1379 (96%), Gaps = 2/1379 (0%)
Strand=Plus/Plus
Query 111 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAGACAACTCGAATCGTCGATT 170
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAAACAACTCGAATCGTCGATT 60
Query 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230
||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 GATAGGCTTCTGAACGAAGAGAAGCAGATGAGGCTCGCGGAAAATGTCGCCGGAACTAGA 120
Query 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCAGCTACCGAGATTCTGAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 180
Query 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACAGATTTTGAATCTCTCCAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 240
Query 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410
|||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct 241 GTGCAACAAGCAATGCAGTATATTGATCAGACACCGGATATCGAAACTCGGGTTGAGCTT 300
Query 411 ATTAAGA-CTCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469
||||||| || || ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAAGACCT-TACTCAACGTATCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 359
Query 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TTTGACCAAGAAGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCAGA 419
Query 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCCATGGCAAAAACTGAGAAAATTGC 479
Query 590 TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAAT 649
|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 480 TTTCATCCTTGAACAAGTCCGCTTGTGTTTGGATCGACGAGATTTTGTCCGTGCACAAAT 539
Query 650 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGAA 709
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 540 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGACACCAAGAAAGAGAAAAAGAA 599
Query 710 GCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGGT 769
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 600 ACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCAGCTGATATACCAACATTGTTGGA 659
Query 770 GCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACAT 829
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GCTAAAGCGAATTTACTATGAGCTCATGATTCGGTATTATTCTCACAACAATGAGTACAT 719
Query 830 TGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGA 889
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 720 TGAGATATGCCGTAGCTACAAGGCGATATATGATATTCCTTCGGTAAAGGAAAACCCAGA 779
Query 890 ACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGATCC 949
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 780 ACAATGGATTCCAGTCCTGAGGAAGATCTGCTGGTTTTTGGCCTTGGCACCACATGATCC 839
Query 950 AATGCAATCGAGCCTACTCAATGCAACCTTGGAAGATAAAAAGTTATCAGAGATTCCTGA 1009
|||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 840 GATGCAATCGAGCCTGCTTAATGCAACCTTAGAAGATAAAAAATTATCAGAGATTCCTGA 899
Query 1010 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 959
Query 1070 GAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1129
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 GAATAAATACAAGGACGAATTTGAGAGTGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1019
Query 1130 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTCAAA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTCGTCTCAAA 1079
Query 1190 GTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1249
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTATTATTCAAGGATTACCTTAAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1139
Query 1250 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1199
Query 1310 ACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATCCTCAACTCGTG 1369
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 ACCATCCGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATTCTCAACTCGTG 1259
Query 1370 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAATTCACAA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAGATTCACAA 1319
Query 1430 AGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAACCCGGTCTAGCCACACACA 1488
|||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 1320 AGAAACAATGGTTCATAAAGCTGCACTAAGAGCTTGAGAAGCCTGTTTAGCCACACACA 1378
> Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1
Length=1681
Score = 1443 bits (781), Expect = 0.0
Identities = 1134/1307 (87%), Gaps = 14/1307 (1%)
Strand=Plus/Plus
Query 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230
|||||||| ||||| |||||||| |||||||| ||||| ||||| |||||||| || ||
Sbjct 200 GATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCGGAAAACGTCGCCGGTACAAGG 259
Query 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290
||||| || || ||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 260 AAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGAAGCTAAGGATTGGAAGCTTCTGAAT 319
Query 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350
|| |||||| | ||||| || ||||||||||||||||| || |||||||| |||||||||
Sbjct 320 GAGCAGATTCTCAATCTGTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATG 379
Query 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410
||||| ||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 380 GTGCAGCAAGCTATGCAGTATATTGATCAGACACCAGACATTGAAACTCGGATAGAGCTT 439
Query 411 ATTAAGAC-TCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469
|||||||| | | ||||||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct 440 ATTAAGACAT-TGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACG 498
Query 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529
| ||||||| |||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 499 CCTCACCAAGAAGCTTGCTAAGATTAAGGAAGAACAGGGTCAAATAGCTGAAGCTGCAGA 558
Query 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 559 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGCGCTATGGCAAAAACTGAGAAAATTGC 618
Query 590 -TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAA 648
||| || ||||||||||| |||||||| ||||||| |||||||||| ||||||||||
Sbjct 619 ATTT-ATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAA 677
Query 649 TTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGA 708
| ||||||||||||||||| || ||||| ||||||||||| || | ||| || || ||||
Sbjct 678 TCTTATCTAGGAAGATCAATCCTAGAGTTTTTGATGCAGACACAAAGAAAGATAAGAAGA 737
Query 709 AGCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGG 768
| |||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||
Sbjct 738 AACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCTGCTGATATACCAACCTTGTTGG 797
Query 769 TGCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACA 828
||| || ||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 798 AGCTTAAGCGGATTTACTACGAGCTTATGATTCGGTACTATACTCATAACAATGAGTACC 857
Query 829 TTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAA-ACCCA 887
|||| || |||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 858 TTGAAATCTGCCGTAGCTACAAGGCGATTTATGATATCCCTTCTGTAAAAGAAACACCG- 916
Query 888 GAACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGAT 947
|| || |||||||| |||||||| ||||| |||||||| |||| ||||||||| |||||
Sbjct 917 GAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGAC 976
Query 948 CCAATGCAATCGAGCCTACTCAATGCAAC-CTTGGAAGATAAAAAGTTATCAGAGATTCC 1006
||||||||||| ||| | ||||||||||| || |||||| || || |||||||| || ||
Sbjct 977 CCAATGCAATCAAGCTTGCTCAATGCAACTCT-GGAAGACAAGAATTTATCAGAAATCCC 1035
Query 1007 TGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCT 1066
||||||||||||||||||||||||| | || ||||||||||| ||||| |||||||||||
Sbjct 1036 TGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCT 1095
Query 1067 CTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGG 1126
||||| ||||||||||| ||||| ||||| ||||||| |||| ||||||| ||||||||
Sbjct 1096 GTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGGTTGGAGGTTCTTTGGG 1155
Query 1127 TGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTC 1186
||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 1156 TGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATTCTTGTTGTCTC 1215
Query 1187 AAAGTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACT-G 1245
|||||| ||| ||||||| ||||| ||||||||||| || ||||||||||| | || | |
Sbjct 1216 AAAGTATTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCA-TAG 1274
Query 1246 AGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGC-CTTGATAGCAAAAATC 1304
|||| || ||||||||||| || || ||||| ||||| ||||| || ||| ||||||||
Sbjct 1275 AGGAGGCGGAGAAGCATCTGTCGGAGATGGTAGTGTCAAAAGCACT-GATTGCAAAAATA 1333
Query 1305 GACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAG-ACAGCAACGAAATCCTCAA 1363
|||||||||||||| || | ||||||||||| | |||| |||||||||| || || ||
Sbjct 1334 GACAGACCATCAGGGATTGTGTGCTTCCAGATCGC-AAAGGACAGCAACGAGATTCTAAA 1392
Query 1364 CTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAAT 1423
|||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1393 CTCGTGGGCAGGGAATTTGGAGAAGCTTTTAGATCTTGTCGAAAAGAGTTGCCACCAAAT 1452
Query 1424 TCACAAAGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAAC 1470
|||||| ||||| |||||||| |||| || || ||| ||||| |||
Sbjct 1453 TCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAAC 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5