BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64780.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1 946 0.0
> Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1
Length=773
Score = 946 bits (512), Expect = 0.0
Identities = 640/697 (92%), Gaps = 27/697 (4%)
Strand=Plus/Plus
Query 144 TAGGGTTTGTGAGATTCGTTCGGACTCTAATGGGGAAGAAACGAAAATCCGAGGCTACGC 203
|||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 102 TAGGGTTTGT--GATTCGTTCGGACTCTAATGGTGAAGAAGCGAAAATCCGAGGCCACGC 159
Query 204 GGCTCGATGAGGTTGATCGAACCATGTATGGCGCGTTTCGAGGCGCTGCTAATTCGCTCT 263
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 160 GGCTCGATGAGGTTGATCGAACCATGTATGGTGCGTTTCGAGGTGCTGCTAATTCGCTCT 219
Query 264 CGCAGCTCTATACACATGCCATGAATCACCAACGCGTTTCTTTCCTCGCCGGTGAACGTC 323
| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 220 CTCAGCTCTATACTCATGCCATGAATCACCAAAACGTCTCTTTCCTCGCCGGTGAACGTC 279
Query 324 GCGGAATGGAGAAGCTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 383
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GCGGCATGGAGAAACTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 339
Query 384 CCACAGCTGATATTACTACCTACTTACAGAATGCGCTTGAATATGAACCTGAGGAGACGT 443
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 340 CCACAGTTGATATTACTACCTACTTGCAGAATGCGCTTGAATATGAACCTGAGGAGACGT 399
Query 444 CGATACCACTCCCCATGCAAGAGTTTTATCAGCACCAATTCGCTCCACCAAACGTAAATA 503
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 400 CAATACCACTCCCCATGCAAGAGTTTCATCAGCACCAATTCGCTCCACCAAACGTAAATA 459
Query 504 CATCAGTAGCTCATGTTCCTTCAAGTCACATAGCACAACAACAACATTATGATTGTAACC 563
| |||||||||||||||||||||||||| ||| || ||||||| | |||||||||||||
Sbjct 460 CTTCAGTAGCTCATGTTCCTTCAAGTCATATA--AC-ACAACAATACTATGATTGTAACC 516
Query 564 AAGAGAAACTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 623
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AAGAGAAAGTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 576
Query 624 ACTTCAACTTGTGTGAGGCTGAGTCTGGTAATAATAACTACAATCCCAACTCTACAGGTG 683
| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 577 AATTCAACTTGTGTGAGGCTGAGTCTGGTAATAAC--C-ACAATCCAAACTCTACAGGTG 633
Query 684 AACACTTATCTTACTGAATAAAATCTTGTTTCATTTGCCGAAAGATGAAAAACATAAATC 743
|| ||||||||||||||| |||||||| ||||||||||| ||| | ||| ||
Sbjct 634 AAGACTTATCTTACTGAA-AAAATCTTATTTCATTTGCC-AAA--T------CAT---TC 680
Query 744 ATTCCATTGTAAAGTCTCAATTGTTT--GTGGTAAAGTATTGTCTCATGTAATACACAAA 801
| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 681 ---C-ATTGTAAAGTCTCAATTGTTTCTGTGGTAAAGTACTGTCTCATGTAATACACAAA 736
Query 802 ACACTTTTTCCTAATCTTTCAAAGAAGCTGGATGAAT 838
|||||||||||||||||| ||||||| |||||||||
Sbjct 737 ACACTTTTTCCTAATCTTGCAAAGAAATTGGATGAAT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5