BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64790.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496695 jgi|Araly1|496695|fgenesh2_kg.8__2511__AT5G64790.1 2518 0.0
> Ahg496695 jgi|Araly1|496695|fgenesh2_kg.8__2511__AT5G64790.1
Length=1604
Score = 2518 bits (1363), Expect = 0.0
Identities = 1475/1529 (96%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 12 AAACACATCTTCGAGATCAAACAAACCCTAA-TTATCATCCATCGTCGCCTTCTCAATAT 70
||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||| |
Sbjct 1 AAACATAGCTTCGAGATCAAACAAGCCCTAATTTATCATTCATCGTCGCCTTCTC---A- 56
Query 71 ATATGGCCGGAAGAGCAGCGATGCTCGTTAACGTCGGGACGGTTATAATGACCGTTTTGA 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ATATGGCCGGAAGAGCAGCGATGCTCGTTAACGTCGGGACGGTTATAATGACCGTTTTGA 116
Query 131 CCCTGGCTAGTTTGGTCGGAGGCTTCGGTGTGAATTGGGGCAATATCGCATCACATCCGT 190
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 117 CCCTGGCTAGTTTGGTCGGAGGCTTCGGTGTCAATTGGGGCAATATCGCATCGCATCCGT 176
Query 191 TGAATCCCAACATTGTTGTTCAGATGCTTAAGGACAATAAGATCAATAAAGTGAAGCTTT 250
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 177 TGAATCCCAACATTGTTGTTCAGATGCTCAAGGACAATAAGATCAATAAAGTGAAGCTTT 236
Query 251 TTGACGCTGATTCATGGACGATGAATGCTTTGGCTGGTACGGGCATGGAGGTTATGGTTG 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 TTGACGCTGATTCATGGACGATGAATGCTTTGGCCGGTACGGGCATGGAGGTTATGGTTG 296
Query 311 GAATCCCTAATAACCTTCTTGAGTCTCTCGCAGATGATTACGATAATGCTAAAGATTGGG 370
|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 297 GAATTCCTAATAACCTTCTTGAAACTCTCGCTGATGATTACGATAATGCTAAAGATTGGG 356
Query 371 TTAAAGAAAACGTGACCCAGTATATTCGTAAGGGTGGCGTCGACATCAAGTACGTAGCCG 430
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 357 TTAAAGAAAACGTGACCCAGTATATGCGTAAGGGGGGCGTCGACATCAAGTACGTAGCCG 416
Query 431 TGGGGAACGAGCCGTTTTTGTCTGCATACAACGGATCGTTCTTGAAGACAACATTTCCAG 490
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGGGAACGAGCCATTTTTGTCTGCATACAACGGATCGTTCTTGAAGACAACATTTCCAG 476
Query 491 CGTTAAAGAACATTCACAAGGCGTTAAAAGAAGCTGGACACACCAATATA-ATGAAAGCC 549
|| ||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||
Sbjct 477 CGCTAAAGAACATTCACAGGGCGTTAAAAGAAGCTGGACACACCGATA-AGATGAAAGCC 535
Query 550 ACGATCCCACAAAACGCAGAAGTTTACCAATCAGCCAACGACAAGCCATCAGAAGGTGAT 609
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 536 ACGATCCCACAAAACGCAGAAGTTTACCAATCAGCAAACGACAAGCCATCAGAAGGTGAT 595
Query 610 TTCCGCAAGGATGTCAAACAAACGATGCTTGATATCGTCAATTTCTTCCACGAAAACGAC 669
|||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct 596 TTCCGCAAGGATGTGAAGCAAACGATGCTTGACATCGTCAATTTCTTCCACGATAATGAC 655
Query 670 TTACCTTTCACCGTCAACATTTACCCTTTCCTTAGTCTTTACCTAAACGAGCATTTTCCC 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 TTACCTTTCACCGTCAACATTTACCCTTTCCTTAGTCTTTACCTAAACGAGCATTTCCCC 715
Query 730 GTTGAGTTCGCTTTTCTTGACGGTGATGGTCAGACAATGACTGACAAAGGAAAGAATTAT 789
||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 716 GTTGAATTTGCTTTTCTTGACGGTAATGGTCAGACAATGACTGATAAAGGAAAGAATTAT 775
Query 790 GATAACGTGTTTGACGCCAATTACGACACACTTGTTTACGCGTTGAAGAAGGCTGGGATT 849
||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 776 GATAACGTGTTCGATGCCAATTACGACACACTCGTTTACGCGTTGAAGAAAGCTGGGATT 835
Query 850 CACGATATGAAGATTATCGTTGGAGAGGTTGGATGGCCAACGGATGGTCACAAATATGCA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CACGATATGAAGATTATCGTTGGAGAGGTTGGATGGCCAACGGATGGTCACAAATATGCA 895
Query 910 TCGCCGAAGCTAGCGGAGAAATTCTATGCAGGGCTTATGAAAAGACTTGCTAAGGACGGT 969
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACCCCGAAGCTAGCGGAGAAATTCTATGCAGGGCTTATGAAAAGACTTGCTAAGGACGGT 955
Query 970 GGGACTCCAACGAGGCCTGAAAGATTAGAGGTCTATCTCTTCGGTTTCCTCGACGAAGAC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGGACTCCAACGAGGCCTGAAAGATTAGAGGTCTATCTCTTCGGTTTCCTCGACGAAGAC 1015
Query 1030 ATGAAGAGTATTCTTCCAGGGCCTTTTGAGAGACATTGGGGAATCTTTAGATACGATGGG 1089
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATGAAGAGTATTCTTCCTGGGCCCTTTGAGAGACATTGGGGAATCTTTAGATACGATGGG 1075
Query 1090 ACACCAAAGTTTATGCTAGATTTCACGGGACAAGGACGCCAAATGGTGCCCGTTGCAGCT 1149
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1076 ACACCGAAGTTTATGCTAGATTTCACCGGACAAGGACGCCAAATGGTGCCCGTTGCAGCT 1135
Query 1150 AAAGGTGTGCAGTACTTGGAAAAACAATGGTGCGTAGTGAACAAAGACACGGTCAATCTA 1209
||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1136 AAAGGTGTGCAATACTTGGAAAAACAATGGTGCGTAGTGAACAACGACACAGTAAATCTA 1195
Query 1210 GACGAAGTTGGTCCTGATCTAGACTATGCGTGTTACCACGGGGACTGCACCGCGATGGAA 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GACGAAGTTGGTCCTGATCTAGACTATGCGTGTTACCACGGGGACTGCACCGCGATGGAG 1255
Query 1270 GCCGGGTCAACTTGTAGTAAGCTAACCAAAGTCCAAAACATATCATACGCATTTAACATG 1329
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCCGGGTCAACGTGTAGTAAGCTAACCAAAGTCCAAAACATATCATACGCATTTAACATG 1315
Query 1330 TATTTCCAGATACAAGACCAAGACGTTAGGGCTTGCGATTTCAAAGGAGCTGCAATGATC 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TATTTCCAGATACAAGACCAAGACGTTAGGGCTTGCGATTTCAAAGGAGCTGCAATGATC 1375
Query 1390 ACCAAGGTCAATGCATCCGTGGGAAGTTGCTTGTTCCCTGTTCAGATCGTTAGTGGAAGT 1449
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 ACCAAGGTCAATGCATCCGTGGGAAGTTGCTTGTTCCCTGTTCAGATTGTTAGTGGAAGT 1435
Query 1450 GATGATTTCAGGATCAACTTTGTGTTCGGAAGATTCGTCGTCTTTGGACTTGTTCTTCTT 1509
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1436 GATGATTTCAGGATCAACTTTGTGTTCGGAAGATTTGTCGTCTTTGGACTTGTTCTTCTT 1495
Query 1510 GGATTGCTCACGGTTATATAAtttgtttt 1538
|||||||||||||||||||||||||||||
Sbjct 1496 GGATTGCTCACGGTTATATAATTTGTTTT 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5