BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64800.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496696 jgi|Araly1|496696|fgenesh2_kg.8__2512__AT5G64800.1         483    4e-136


> Ahg496696 jgi|Araly1|496696|fgenesh2_kg.8__2512__AT5G64800.1
Length=321

 Score =  483 bits (261),  Expect = 4e-136
 Identities = 302/322 (94%), Gaps = 2/322 (1%)
 Strand=Plus/Plus

Query  1    ATGTTAATTTTATCTTCACGATATGCAATGAAACGAGATGTTTTAATCATTGTAATCTTT  60
            ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  1    ATGTTAATTTTATATTCACGATATGCAATGAAACGAGATGTTGTAATCATTTTAATCTTT  60

Query  61   ACAGTGTTAGTATTAATCATTATCTCCCGTTCAAGTTCGATCCAAGCTGGAAGATTCATG  120
            ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACACTGTTAGTTTTGATCATTATCTCCCGTTCAAGTTCGATCCAAGCTGGAAGATTCATG  120

Query  121  ACTACAGGAAGAAATCGTAATTTGAGCGTTGCTCGATCACTATACTACAAGAATCATCAC  180
            |||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACTACAAGAAGAAAGCAAAATTTGAGCGTTGCTCGATCACTATACTACAAGAATCATCAC  180

Query  181  AAGGTTGTGATCACGGAGATGTCAAATTTTAATAAAGTTAGACGAAGATCGTCTAGATTT  240
            ||| ||||||||||||||||||| | |||||||||||| |||||||||||||||| | ||
Sbjct  181  AAGTTTGTGATCACGGAGATGTCCAGTTTTAATAAAGTCAGACGAAGATCGTCTAAAGTT  240

Query  241  CGGAGAAAGA-CGGACGGCGACGAGGAAGAAGAAGAGAAACGATCTATCCCCACAGGTCC  299
            |||||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  241  CGGAGAAAGATCG-ACGGCGACGAGGAAGAAGAAGAGAAGCGATCTATCCCCACCGGTCC  299

Query  300  AAATCCTTTGCACAACAAGTAG  321
            ||||||||||||||||||||||
Sbjct  300  AAATCCTTTGCACAACAAGTAG  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5