BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64810.1
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496697 jgi|Araly1|496697|fgenesh2_kg.8__2513__AT5G64810.1 1075 0.0
> Ahg496697 jgi|Araly1|496697|fgenesh2_kg.8__2513__AT5G64810.1
Length=681
Score = 1075 bits (582), Expect = 0.0
Identities = 652/685 (95%), Gaps = 8/685 (1%)
Strand=Plus/Plus
Query 1 AAATGAATATCTCTCAAAACCCTAGCCCTAATTTTACGTACTTCTCCGATGAAAACTTTA 60
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 AAATGAATATCTCTCAAAACCCTAGCCCTAATTTCACGTACTTCTCGGATGAAAACTTTA 60
Query 61 TTAATCCGTTTATGGATAACAACGATTTCTCAAATTTGATGTTCTTTGACATAGATGAAG 120
| |||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||
Sbjct 61 TCAATCCGTTTATGGATAACAATGATTTCTCAAATTTGATGTTCTTCGACGTCGATGAAG 120
Query 121 GAGGT-AACAATGGATTAATCGAGGAAGAGATCTCATCTCCGACAAGCATCGTTTCGTCG 179
|| || | |||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 GA-GTCAGCAATGGATTAGTCGAGGAAGAGATTTCATCTCCGACAAGCATAGTTTCGTCG 179
Query 180 GAGACATTTACCGGGGAAAGCGGCGGATCCGGCAGCGCAACAACGTTGAGTAAAAAGGAA 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGACATTTACCGGTGAAAGCGGCGGATCCGGCAGCGCAACAACGTTGAGTAAAAAGGAA 239
Query 240 TCAACTAATAGAGGAAGTAAAGAGAGTGATCAGACGAAGGAGACGGGTCATCGAGTTGCA 299
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 240 TCAACTAATAGAGGAAGTAAAGAGAGTGATCAGACCAAGGAGACGGGTCATAGAGTTGCA 299
Query 300 TTTAGAACGAGATCGAAGATTGATGTGATGGATGATGGTTTTAAATGGAGGAAGTATGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTAGAACGAGATCGAAGATTGATGTGATGGATGATGGTTTTAAATGGAGGAAGTATGGC 359
Query 360 AAGAAATCTGTCAAAAACAACATTAACAAGAGGAATTACTACAAATGCTCAAGTGAAGGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAAATCTGTCAAAAACAACATTAACAAGAGGAATTACTACAAATGCTCAAGTGAAGGT 419
Query 420 TGCTCGGTGAAGAAGAGGGTAGAGAGAGATGGTGACGATGCAGCTTATGTAATTACAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTCGGTGAAGAAGAGGGTAGAGAGAGATGGTGACGATGCAGCTTATGTAATTACAACA 479
Query 480 TATGAAGGAGTCCATAACCATGAGAGTCTCTCTAATGTCTATTACAATGAAATGGTTTTA 539
|||||||||||||||||||||||||| | |||| ||||||||||| |||| ||||||||
Sbjct 480 TATGAAGGAGTCCATAACCATGAGAGCCCCTCTCATGTCTATTACGATGACATGGTTTTG 539
Query 540 TCTTATGATCATGATAACTGGAACCAACACTCTCTTCTTCGATCTTAATCCAAATCTCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTATGATCATGATAACTGGAACCAACACTCTCTTCTTCGATCTTAATCCAAATCTCTC 599
Query 600 ATCCTCGTTGAGATTGTAAGATACCAACAATATTAATATTAT-AA-T-CTCAATGCTTTG 656
|||||| ||||||||||| |||||||| | ||||| || | | || | ||||||||||||
Sbjct 600 ATCCTCCTTGAGATTGTAGGATACCAA-A-TATTA-TAATCTCAAATTCTCAATGCTTTG 656
Query 657 TATAATTTGATAGGTGTATAATAAA 681
|||||||| ||||||||||||||||
Sbjct 657 TATAATTTTATAGGTGTATAATAAA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25847337726
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5