BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64813.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496698 jgi|Araly1|496698|fgenesh2_kg.8__2514__AT5G64813.1 2071 0.0
Ahg325538 jgi|Araly1|325538|fgenesh1_pm.C_scaffold_6000758 784 0.0
Ahg887974 jgi|Araly1|887974|Al_scaffold_0945_1 148 1e-34
> Ahg496698 jgi|Araly1|496698|fgenesh2_kg.8__2514__AT5G64813.1
Length=1761
Score = 2071 bits (1121), Expect = 0.0
Identities = 1248/1308 (95%), Gaps = 14/1308 (1%)
Strand=Plus/Plus
Query 557 AATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCAGATCTTAGCGCCATTATG 616
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 460 AATGAAGTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATG 519
Query 617 TGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 676
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 520 TGGGCAAGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 579
Query 677 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGG 736
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 580 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGG 639
Query 737 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 699
Query 797 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGAGATACAAAGATTG 856
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 700 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGAGATACAAAGATTG 759
Query 857 CCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAAG 916
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 760 TCGGTCACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAG 819
Query 917 AAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTTC 976
|||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 820 AAGAACAAAAACAAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACTGGGACTTTTTC 879
Query 977 AGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 1036
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 880 AGCTCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 939
Query 1037 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 999
Query 1097 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTCCCTCT 1156
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1000 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCT 1059
Query 1157 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1119
Query 1217 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1179
Query 1277 ACTGCCAGCAGCTTCACCATGGTCTATTTCG-CCGGTTCCAACGTCATCATCGCAACGGT 1335
|||||||||||| |||||||||||| ||||| || ||||||| |||||||| |||||||
Sbjct 1180 ACTGCCAGCAGCCTCACCATGGTCTGTTTCGTCCA-TTCCAACCTCATCATCCCAACGGT 1238
Query 1336 TAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCCATGGAGATC 1395
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1239 TAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGAGAAC 1298
Query 1396 CATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1455
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1299 CATACAAGTACAACAACACATTACTGCCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1358
Query 1456 CCACGCTCTATCCGCAACAACCAGTGTCCACCCCTGATAACTACACCATTCCGAGATACT 1515
|||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 1359 CCACGCTCTATCCGCAACAACCTGTGTCTACCCCTGATAACTACGCCATCCCGAGATACT 1418
Query 1516 CTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAG-GTCAAAGCGAATGGAT 1574
|||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||
Sbjct 1419 CTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGAATGGAT 1477
Query 1575 ATTAACGTCTGAAGTCTCTCATCTCTTGTTAGCTCTTCTCATTCCAAGAAAACTTTATGT 1634
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1478 ATAAACGTCTGAAGTCTCTCATCTCTTGTTTGCTCTTCTCATTCCAAGAAAACTTCATGT 1537
Query 1635 T---GCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1691
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TATTGCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1597
Query 1692 ATGTGTGCTTAACCCCTCTTTGATTTGTACATTGTGGGGTTT-GATCTTATAGCAAATTC 1750
||||||| | ||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1598 ATGTGTG-TAAACCC-TCTTTGGTTTGTACATTGTGGGGTTTTGATCTTATAGCAAATTC 1655
Query 1751 TTTGAATGtttttttttCTTGGGTTATCAT--GTATTACACACTGAATGATTACAAAATC 1808
||||||||||||||||| || ||||||||| |||||||||| |||| | ||||||||||
Sbjct 1656 TTTGAATGTTTTTTTTTTTTTGGTTATCATATGTATTACACAGTGAACGGTTACAAAATC 1715
Query 1809 ACAATAATGTTTGTTATTTTTGTTTACAATCTAATCATATCAGTTTGT 1856
||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1716 ACAATAATGTTTGTTATTTTT-TT-ACAATCTAAGCATATCAGTTTGT 1761
Score = 357 bits (193), Expect = 2e-97
Identities = 283/323 (88%), Gaps = 19/323 (6%)
Strand=Plus/Plus
Query 3 AAACGAAGTCGTTTCATATCT--GTTCTTCCG-CCCAAATCTCAAACACTAGTAAGTAAA 59
||||||||||||||||||| | | ||||||| ||||||||| ||||||| |||||||||
Sbjct 1 AAACGAAGTCGTTTCATATTTACGCTCTTCCGCCCCAAATCTGAAACACTCGTAAGTAAA 60
Query 60 TTCGAAGGGAGTCTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTTCT-CTTATC 118
|||||| ||| | |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 TTCGAA-GGAATTTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTT-TGCTTATC 118
Query 119 TTCGATAGAGAAATTTGTATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTACTTGAT 178
||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 TTCCAGAGAGAAATTTGCATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTAATTGAT 178
Query 179 TGATTTAGGAGGTGGAGAGATCTTTCTGAACAAGTTTGATTCTGTTGGTAATTGATCTGA 238
|||||| || || |||||||||||||| || ||||||||||||| | | ||||
Sbjct 179 TGATTTCGGTGGAGGAGAGATCTTTCTAAAGAAGTTTGATTCTG-----A-T----CTGA 228
Query 239 AATCCTAGGTTTTAGCCGTAGATCTGCTGCTTGTTTCGATCGATTTGGGATACC-GTAGG 297
|||| ||||||| ||||||||||||||||||| |||||||||||| |||| | | ||||
Sbjct 229 AATCATAGGTTTCAGCCGTAGATCTGCTGCTTCTTTCGATCGATTCGGGAAATCTGTAG- 287
Query 298 TATTGATTCCATAGAATTTCTCG 320
||||||||||||||||||| |||
Sbjct 288 TATTGATTCCATAGAATTT-TCG 309
> Ahg325538 jgi|Araly1|325538|fgenesh1_pm.C_scaffold_6000758
Length=1002
Score = 784 bits (424), Expect = 0.0
Identities = 845/1042 (81%), Gaps = 53/1042 (5%)
Strand=Plus/Plus
Query 558 ATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCA-GATCTTAGCGCCATTATG 616
|||| ||||||||||||||||||||||||||||||||| || | || | |||||||||||
Sbjct 1 ATGAGGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAACATG-TCGTCGCGCCATTATG 59
Query 617 TGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 676
|| ||| ||||||| ||||| |||||||| |||||||| ||||| |||| ||| | ||
Sbjct 60 CGGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAGTCATCTCTTCTTCA 119
Query 677 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGG 736
||||| |||||| || ||||| |||||||| ||||||| |||||||| || |||||
Sbjct 120 TCTCATTGTCAAAGGCTCCTCTATCGTTCGCCCTTCTCAAACTATTGGATGTACAGTTGG 179
Query 737 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 796
|||||||||| || | |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 180 TGTCAAGCACTTAGCTTACGCAAGTCCTGCTAGTTCTTCAAGTAGCATTAAAGGTGACTC 239
Query 797 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGA-GATACAAAGATT 855
|||||||||||||||||| ||||| ||||||||||| || ||||| | ||||||||||||
Sbjct 240 AGAGAGAGATTTCTTTGTCGAACTTTGGGATGTATCTGGTCATGA-ACGATACAAAGATT 298
Query 856 GCCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAA 915
|||| |||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 299 GCCGCTCACTGTTCTATTCACAAGTTAATGGAGTTATCTTTGTTCATGATCTTTCTCAAC 358
Query 916 GAAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTT 975
||||||||||||| | ||||||||||||||| ||| ||| ||| | |||| | ||||
Sbjct 359 GAAGAACAAAAACAAATTTGCAGAAATGGGCAGGTGAAGTTTCAGTAAATGGGGCGTTTT 418
Query 976 CAGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTG-TAGTTGGC 1034
||||||| ||| | || || || || ||||||||||| || || ||||||| || ||||
Sbjct 419 CAGCTCCACTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCTTACATTGTTA-TTGGA 477
Query 1035 AACAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGAT 1094
|||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 478 AACAAAGCTGATATTGCTGCAAAGGAAGGAACAAGTGGAAGCAGTGGCAATCTTGTTGAT 537
Query 1095 GCAGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCA-AGTGAGGATCTCCC 1153
||||||||||| |||||||||||||||||| ||||||| | || ||||| || || ||
Sbjct 538 GCAGCTCGTCAGTGGGTTGAGAAGCAAGGTCTGCTTCC--C--CATAGTGATGAACTTCC 593
Query 1154 TCTCTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATA 1213
||||| ||| ||||| ||| | ||||| ||||||||| ||||||||| ||| | |||||
Sbjct 594 TCTCTCTGAGAGCTTCCCTAGCAATGGTGGTCTCATAATGGCTGCCAAGGAAGCTAGATA 653
Query 1214 CGATAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGA 1273
|| || |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 TGACAAAGAAGCTCTGAACAAATTTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGA 713
Query 1274 TGAACTGCCA--GCAG-CTTCACCATGGTCTATTTCGCC-GGTTCCAACGTCATCATCGC 1329
|||||| || || ||||| |||||||| |||| || || || | || | |
Sbjct 714 TGAACTACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCCTGGA-CC----T--TC--C-C 763
Query 1330 AACGGTTAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCC--- 1386
| |||||||||||| ||||||||||| ||||| || || || ||||||| |
Sbjct 764 AGCGGTTAGACGAGGGCACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGG 823
Query 1387 ATGGAGATCCATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAA 1446
| |||||||| |||||||| |||| || |||||| | | |||||| | | |
Sbjct 824 AAGGAGATCCTTACAAGTATAACA-CAT--TACCAC-A-----A-CACAAC-CT-C--A- 868
Query 1447 CTCCGCCTCCCACGCTCTATCCGCAACAACCAG-TGTCCACCCCTGATAACTACACCATT 1505
| | |||||| || ||||||||||| |||||| || ||| | | | ||| |||||
Sbjct 869 CGCAGCCTCCTACACTCTATCCGCAGCAACCACCTG---ACCGTT-ACAGTTACGCCATT 924
Query 1506 CCGAGATACTCTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAGGTCAAAG 1565
||||||| |||||||||||||||| | || || | |||||||| | || |||||| |||
Sbjct 925 CCGAGATTCTCTCTTTCCAGTGTAGAGGAGAC--C-AACAATGGTAATGGCAGGTCTAAG 981
Query 1566 C-GAATGGATATTAACGTCTGA 1586
| || ||||||||||||| |||
Sbjct 982 CCGA-TGGATATTAACGTTTGA 1002
> Ahg887974 jgi|Araly1|887974|Al_scaffold_0945_1
Length=192
Score = 148 bits (80), Expect = 1e-34
Identities = 88/92 (96%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 654 GTTGGAAAAACATCACTTGTACACCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCT 713
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTGGAAAAACATCACTTGTACCCCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCT 60
Query 714 CAAACGATTGGATGCACTGTTGGTGTCAAGCA 745
||||| ||||||||||| || |||||||||||
Sbjct 61 CAAACAATTGGATGCACAGTAGGTGTCAAGCA 92
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5