BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64816.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951320 jgi|Araly1|951320|scaffold_803207.1                        664    0.0  


> Ahg951320 jgi|Araly1|951320|scaffold_803207.1
Length=429

 Score =  664 bits (359),  Expect = 0.0
 Identities = 415/440 (94%), Gaps = 12/440 (3%)
 Strand=Plus/Plus

Query  43   ATTCAAGTCTTAAAGAAGAGAAAAATGGTGGAGGTGTGGTGGTCACTGATAGGAGCAGCA  102
            |||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATTCAAGTCTT---TAAGA-AAAAATGGTGGAGGTGTGGTGGTCACTGATAGGAGCAGCA  56

Query  103  GTGCCTGCACTAATTGCTGGTCAAGCTTGGAGGATAAAGAAGAGACATGGCGAAGAAGAG  162
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  57   GTGCCTGCACTAATTGCAGGTCAAGCATGGAGGATAAAGAAGAGACATGGCGAAGAAGAG  116

Query  163  AGGATCAAGAGTGCTCGAGGAAGAGAGAAAAGCTCTGATGAAATCTTTGTCTGTGAAAGA  222
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  117  AGGATCAAGAGTGCTCGAGGCAGAGAGAAAAGCTCTGATGAAATCTTTGTCTGTGAAAGA  176

Query  223  GTTTGCACTTCCAAAAGAATGCTGAAAAAAGTTGGAGCTTTCTCTAAAGATCCTATCCCC  282
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  177  GTTTGCACTTCTAAAAGAATGCTGAAAAAGGTTGGAGCTTTCTCTAAAGATCCCATCCCC  236

Query  283  GACACTTGTGTTACTGTCTGCGGTGTATCTGAGCTCGACGCTTGCTCTGATGCTTGTGCT  342
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  237  GACACTTGTGTTACTGTCTGCGGTGTATCTGAGCTCGACGCTTGCTCTGATGCTTGCGCG  296

Query  343  CGAACTGTTTGCGTTAACCAGCATCAAGTTGCTAATTGGAATGACATTTGTCTCAGAAGA  402
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CGAACCGTTTGCGTTAATCAGCATCAAGTTGCTAATTGGAATGACATTTGTCTCAGAAGA  356

Query  403  TGTCAAAGTGAATGTCTTAAGCtctcttcttcttcttcttcttctCGCTATTCTTGAATT  462
            ||||||||||||||||||||||||||||||||||||||| |  |||  | | ||||||||
Sbjct  357  TGTCAAAGTGAATGTCTTAAGCTCTCTTCTTCTTCTTCT-CG-CTC--T-T-CTTGAATT  410

Query  463  TGAAATG-CTATGATttgtt  481
            ||||| | ||||| ||||||
Sbjct  411  TGAAA-GACTATGGTTTGTT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5