BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64820.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332703 jgi|Araly1|332703|fgenesh1_pm.C_scaffold_8002046           588    1e-167


> Ahg332703 jgi|Araly1|332703|fgenesh1_pm.C_scaffold_8002046
Length=450

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 409/451 (91%), Gaps = 14/451 (3%)
 Strand=Plus/Plus

Query  1    ATGAATGGA-TCAAGAAGAATAAGATTCGGCGTCTCAGTCTTC-T-G-CATCATCATC--  54
            |||||| || ||||||||||| ||||| ||  ||||| ||||| | | ||||||||||  
Sbjct  1    ATGAAT-GACTCAAGAAGAATCAGATTTGGTTTCTCATTCTTCTTCGTCATCATCATCTT  59

Query  55   -AT-T-T----TGATATCCGGGGTATCTGCAGATGGAGCGGAAAGTGATAGTGCCGCGAA  107
             || | |     ||| |  | |||||||||||||||||||||||||||| ||| ||||||
Sbjct  60   AATCTCTGGGGCGATTTTAGCGGTATCTGCAGATGGAGCGGAAAGTGATGGTGTCGCGAA  119

Query  108  GAAAGAAGAGAATCCATCGATTGTAAAGATCATAAGTGGGATTTTTGGCAACAAGTTTCC  167
             |||||||||||||| ||||||||||||| |||| |||||||||||||||| || |||||
Sbjct  120  AAAAGAAGAGAATCCGTCGATTGTAAAGACCATATGTGGGATTTTTGGCAAGAAATTTCC  179

Query  168  TCCGAGTTCATGGGAATTGATTCAAGGTGCAATGCAGAAGATCCAGATGAAGCTTTACCC  227
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  180  TCCGAGTTCATGGGAATTGATTCAAGGTGCAATGCAGAAGATCCAAATGAAGCTCTACCC  239

Query  228  TCCAAATCTAGATTTCAGAAGCAACAGCGACAAAAGCAACATAGAGGAAGAAGATAAAGC  287
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  240  TCCAAATCTAGATTTCAGAAGCAACAGCGACAAAAACAACAGAGAGGAAGAAGATAAAGC  299

Query  288  AGAGAAAGTGAGAGAAGCAGCTACAAGGAGTCTAGAAGTAAGCAAAGAAGCCATTGAAGA  347
            ||||||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct  300  AGAGAAAGTGAAAGAAGCAGCGACGAGGAGTCTCGAAGTAAGCAAAGAAGCTATTGAAGA  359

Query  348  GTCTGCAAAACTAGCAGGAGATGTTGTAGGTGAAGTAGTTCAGAAAACAGCTGAGAAAGT  407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GTCTGCAAAACTAGCAGGAGATGTTGTAGGTGAAGTAGTTCAGAAAACAGCTGAGAAAGT  419

Query  408  TACTAAACAAACCTCACATGATGAAATGTAA  438
            ||| |||||||||||||||||||||||||||
Sbjct  420  TACCAAACAAACCTCACATGATGAAATGTAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5