BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64830.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496702 jgi|Araly1|496702|fgenesh2_kg.8__2518__AT5G64830.1 1888 0.0
> Ahg496702 jgi|Araly1|496702|fgenesh2_kg.8__2518__AT5G64830.1
Length=1459
Score = 1888 bits (1022), Expect = 0.0
Identities = 1329/1471 (90%), Gaps = 46/1471 (3%)
Strand=Plus/Plus
Query 76 AAGAGCTCTGTTCTACTTTGATCGGGA-AAC----TGTAACAATGGTCGGAATTCTTCTG 130
||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 17 AAGAGCTCTGTTCTACTTTGATC-GGAGAACTGTATGTAACCATGGTCGGAATTCTTCTG 75
Query 131 GGGTTGCCTGGGAAGTGGGCAGAAGATGAGCTTGAGCCTTCTGATCACTACACAACCAAA 190
||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 76 GGGTTACCTGGGCAGTGGGCAGAAGACGAGCTTGAGTCTTCTGATCACTACACAACAAAA 135
Query 191 ATCGGTGGTCTTCCGGATTGGCCGCCAATACCCGATGATGCACTGAAACCAGAACTACTC 250
||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 136 ATCGGCGGTCTTCCGGATTGGCCACCAATACCCGATGATACACTGAAACCAAAACTACTC 195
Query 251 AATTGTTGTTCATGTGGAAGTAAACTTTCTCTCGTAGCTCAGGTGTATGCCCCAATCTCA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AATTGTTGTTCATGTGGAAGTAAACTTTCTCTCGTAGCTCAGGTGTATGCCCCAATCTCA 255
Query 311 ACTGAAATTTTAGACATCCAAGAGCGTACCCTCTATATATTTGGTTGCTTGATGCCTAAA 370
|||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 256 ACTGAAATTTCAGACATCCAAGAGCGTACCCTCTACATATTCGGTTGCTTGATGCCTAGA 315
Query 371 TGTGGAACCTCTGAACAAAGTTGGAGAGCTTTTAGCATTCAGAAAGCTATAGCAAAAGAG 430
|||||||||||||||||||| ||||||||||||||| || ||||||||| | |||||||
Sbjct 316 TGTGGAACCTCTGAACAAAGCTGGAGAGCTTTTAGCGTTTGGAAAGCTATTGAAAAAGAG 375
Query 431 AAAGGATCAACTAAAATAGCGGATTTGCCTGTGGCCTT-TCCT-AAAACACATCGGT-T- 486
|||| ||||| | |||| | |||||| ||||| |||| ||| | | ||||| | |
Sbjct 376 AAAGAATCAAGTGAAATGGTGGATTTACCTGT-CCCTTCGCCTCCAGATACATC-TTCTA 433
Query 487 AGACGGtga-tgatgatgatgatgatgatgatgatgaAGATTTTGATTTTGCGAGTTTAG 545
| || | | || | | || ||||||||||||||||||||||||||||||| || |||||
Sbjct 434 AAAC--TCATTGGTTA-GACGATGATGATGATGATGAAGATTTTGATTTTGAGACTTTAG 490
Query 546 CTAAGGCGCTGGCAGAGGCTTCTTCTGCTGCGGCTTCC-ATTACGAAGAAACAAAAGAGT 604
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 491 CTAAGGCGCTCGCAGAGGCTTCTTCTGCTGCGGCTTCCAATT-CGAAGAAACAAAAGAGT 549
Query 605 AAACCAAGTGGCAATGCTAGTTCAGGGACTAAAGCAAAGCCTTCACCTTTGAAATCTGAA 664
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 550 AAACCAAATGGCAATGCTAGTTCAGGGACTAAAGCAAAGCCTTCGCCTTTCAAATCTGAA 609
Query 665 ACAAGAGTTGAGGATCATATTAAACTTGAGACTGGTGCGGTGGTTCCGTGCTTCTACATT 724
|||||||||| |||||| |||||| |||||||||| | ||||||||||||||||||||||
Sbjct 610 ACAAGAGTTGCGGATCAAATTAAAGTTGAGACTGGAGTGGTGGTTCCGTGCTTCTACATT 669
Query 725 TATACAAAGGAAGAGATCCCCTCAAAAGAAGTTGATCGATTCTCACA-GAATTATTCGTC 783
|||||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||
Sbjct 670 TATACAAAGGAAGAGATCCCCTCAAAAGAAGTCGATCGATGCTC-GATGAATTACTCGTC 728
Query 784 TCTGTCTATTAAGGATAAAGGAACCGGCAACAATGATGAGAGTGAATCCGAAGAAAAGTG 843
| |||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 729 TTTGTCCATCAAGGATAAAGAAACCGGCAACAATGATGAGAGTGAATCCGAAGAAACGTG 788
Query 844 GGAGGATGAGAAATATGAATATGACAAAGCCCTGAATGCAGATAGGACTTATCTTAAGTT 903
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 789 GGAGGATGAGAAATATGAATATGACAGAGCCCTGAATGCAGATAGGACTTATCTTAAGTT 848
Query 904 CAAAAAACGGCTAGATGCAAATCCGGAACAATGTTTCAGGTACTGGTATGGCGGTAAGCC 963
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 849 CAAAAAACGGCTAGATGCAAACCCGGAACAATGTTTCAGGTACTCGTATGGGGGTAAGCC 908
Query 964 GATACTAGCCACAGAAGACATGAAATCTCCGGATAAATGCAGGAACTGCGACTCTCAAAG 1023
||| || ||||| ||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 909 GATTCTGGCCACTGAAGACATGAAATCTCCCGATAAATGCAGGAATTGCGACTCTCCAAG 968
Query 1024 GCACTTTGAGATACAACTCATGCCTCCATTAATATATTTTCTACATGAAGGTGTTGTTGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 969 GCACTTTGAGATACAACTCATGCCTCCATTAATATATTTTCTACATGAAGGTGTTGTGGA 1028
Query 1084 T-AAAGGAATTAAGCAATCATTGGATAATTGGGATTGGATGACACTTATTGTCTACACTT 1142
| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1029 TGAAAGGC-TTAAGCAATCATTGGATAATTGGGATTGGATGACGCTTATTGTCTACACTT 1087
Query 1143 GTTCCAAGAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTTG 1202
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1088 GTTCCAAGAACTGCGCAAACACTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTAG 1147
Query 1203 CAGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCAAATGAAAATTTT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1148 CAGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCAAATGAAATTTTT 1207
Query 1263 CCCCTAAGAAGATGTTGCTCAAGTGATTATAGCTATCAAGAAGTCAAATGCGCCATGGAA 1322
|||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 1208 TCCCTAAGAAGATGTTGCTGAAGTGATTACAGCTATCAAGAAGTCAAATGCGGCATGAAA 1267
Query 1323 TTATCTTCTTAAATTGTTTCAGGACAGATG-TCCCCAAGAAGA-TGGAGCTGCT-AAACA 1379
||| ||||| ||||||||||||||||| | ||| |||||||| || ||||||| ||| |
Sbjct 1268 ATATGTTCTTCAATTGTTTCAGGACAGA-GATCCTCAAGAAGAGTG-AGCTGCTTAAAAA 1325
Query 1380 -TACATTTCTTTTGTTAAAATGATTAGTCTTTATGTAACATTAAATTTTATAAGACAGAT 1438
||||||| || | |||||||||||||||||| ||||| |||||||
Sbjct 1326 ATACATTT-TTAT-TTAAAATGATTAGTCTTTTTGTAA---------------GACAGAT 1368
Query 1439 GCTTTTATTGGATTAGTTTTGATTTAATTCTCTTTAAGGTCAA-TGCAAGAACCGTTCAA 1497
|||||||||||||| ||| ||||||||||||| || ||||| ||||||||||||||||
Sbjct 1369 GCTTTTATTGGATTTCTTTCGATTTAATTCTCTAAAAAGTCAAATGCAAGAACCGTTCAA 1428
Query 1498 ACCAAAAATGTGTTCTGCTTCTTTTGATGCG 1528
|| ||||||||| ||||| ||||||||||||
Sbjct 1429 ACAAAAAATGTGCTCTGCCTCTTTTGATGCG 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5