BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64840.1
Length=2429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496704 jgi|Araly1|496704|fgenesh2_kg.8__2520__AT5G64840.1 3435 0.0
Ahg487818 jgi|Araly1|487818|fgenesh2_kg.6__952__AT5G09930.1 1753 0.0
> Ahg496704 jgi|Araly1|496704|fgenesh2_kg.8__2520__AT5G64840.1
Length=2367
Score = 3435 bits (1860), Expect = 0.0
Identities = 2091/2201 (95%), Gaps = 22/2201 (1%)
Strand=Plus/Plus
Query 51 TCTGCTGCTTCTTCTTCTTCTTCAGTAGAGCG-AGATTCTCTCGCGCTCTCTATCGCT-- 107
|||||| |||||||||||||||| |||||| | ||||||||||||| || |||
Sbjct 25 TCTGCTTCTTCTTCTTCTTCTTCGGTAGAG-GAAGATTCTCTCGCG--AGAGATTGCTCA 81
Query 108 ACATATAACCATGGGTTTATCAACGAATCTCCATAGCCTCGACCTCCGTTCAACTTTCTT 167
|| | | ||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 82 ACTTCTCTCCATGGGCTTATCAACAAATCTCCATAGCCTCGACCTCCGTTCAACATTCTT 141
Query 168 CACCGG--T-C-TAC--GTACATCTCCAATCCCTTCCAATTTCATCAAAATCTCTTCCAT 221
|||||| | | | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CACCGGTCTCCGTCCTTGTCCATCTCCAATCCCTTCCAATTTCATCAAAATCTCTTCCAT 201
Query 222 TTCCAACCCTAGACGC-GATATCTCCACCATCAGAGCCCAAGTCTCCACCATCAGCCTCG 280
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 202 TTCCAACCCTAGACGCGGA-ATCTCCACCATCAGAGCCCAAGTTTCCACCATCAGCCTCG 260
Query 281 AGACCTCCGTTAAACAGCGTCAAGACGAAATCGAATCTCTTTTCTCG-AAGCAACCCTCT 339
|||||||||||||| |||||||||||||||||||||| ||||||||| || ||| ||||
Sbjct 261 AGACCTCCGTTAAAGAGCGTCAAGACGAAATCGAATCGCTTTTCTCGAAACCAA-CCTC- 318
Query 340 C-AGCAAGACTCCGATCGGAAACGAAACGGGAAGAGTTCCAAAAACGGAGCTTCTGGGAT 398
| | ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 319 CGAACAAGACTCCGACCGGAGACGAAACGGGAAGAATTCCAAAAACGGAGCTTCTGGGAT 378
Query 399 ATCTTCAGGTGTGAAGCTAGAGAACATAAGGAAAAGCTACAAAGGCGTGACTGTGCTTAA 458
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 379 TTCGTCAGGTGTGAAGCTAGAGAACATAAGGAAGAGCTACAAAGGCGTGACTGTGCTTAA 438
Query 459 AGATGTGACATGGGAAGTGAAGAGAGGTGAGAAAGTAGGGTTAGTTGGTGTGAACGGAGC 518
||||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 439 AGATGTGACCTGGGAAGTGAAAAGGGGTGAGAAAGTAGGGTTAGTGGGAGTGAACGGAGC 498
Query 519 TGGGAAGACGACTCAGCTCAGGATTATCACTGGTCAAGAAGAGCCTGATTCTGGTAACGT 578
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 499 TGGGAAGACGACTCAGCTCAGGATTATCACTGGTCAAGAAGAGCCTGATTCAGGTAACGT 558
Query 579 AATCAAGGCCAAACCCAATATGAAAGTAGCTTTCTTGAGCCAGGAATTTGAGGTTTCGAT 638
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 559 AATCAAGGCCAAACCCAATATGAAAATAGCTTTCTTGAGCCAGGAATTTGAGGTTTCGAT 618
Query 639 GAGTAAGACTGTGAGGGAAGAGTTCATGACTGCTTTCAAGGAAGAGATGGAGATTACTGA 698
||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 619 GAGTAAGACGGTGAGGGAAGAGTTCATGAGTGCTTTTAAGGAAGAGATGGAGATCACTGA 678
Query 699 GAAGCTTGAGAAAGTTCAGAAGGCTATTGAGGGATCTGTTGATGATTTGGATCTTATGGG 758
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 679 GAAGCTTGAGAAAGTTCAGAAGGCTATTGAAGGATCTGTTGATGATTTGGATCTTATGGG 738
Query 759 AAGGTTATTAGATGAATTTGATTTGTTGCAGAGACGAGCTCAGGCTGTGAATTTAGATTC 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 739 AAGGTTATTAGATGAATTTGATTTGTTGCAGAGACGAGCTCAGGCTGTGAATTTGGATTC 798
Query 819 CGTTGATGCTAAGATTAGTAAGTTGATGCCGGAATTAGGGTTTG-CTCCTGAGGATGCTG 877
||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||
Sbjct 799 CGTTGATGCTAAGATTAGTAAGTTGATGCCGGAATTAGGTTTTGCCT-CAGAGGATGCTG 857
Query 878 ATAGGCTTGTGGCTTCGTTTAGTGGTGGATGGCAAATGAGAATGTCACTTGGAAAGATTT 937
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATAGGCTTGTGGCTTCCTTTAGTGGTGGATGGCAAATGAGAATGTCACTTGGAAAGATTT 917
Query 938 TGCTTCAGGATCCAGATTTGCTGCTACTTGATGAGCCGACAAATCATTTGGATCTTGATA 997
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 918 TGCTTCAGGATCCAGATTTGCTGCTTCTTGATGAGCCGACCAACCATTTGGATCTTGATA 977
Query 998 CTATTGAGTGGCTTGAAGGTTATTTGCAAAAGCAAGATGTGCCTATGGTTATTATTTCAC 1057
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 978 CTATTGAGTGGCTTGAAGGTTATTTGCAGAAGCAAGATGTGCCTATGGTTATTATTTCAC 1037
Query 1058 ATGACAGAGCCTTTCTTGATCAGTTATGTACTAAAATTGTGGAAACTGAGATGGGTGTGT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATGACAGAGCCTTTCTTGATCAGTTATGTACTAAAATTGTGGAAACTGAGATGGGTGTGT 1097
Query 1118 CCAGGACATTTGAGGGTAATTATTCTCAGTATGTGATCTCAAAGGCTGAGTGGATCGAAA 1177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1098 CCAGGACATTTGAGGGTAATTATTCTCAGTATGTGATCTCAAAGGCAGAGTGGATCGAAA 1157
Query 1178 CTCAGAATGCAGCGTGGGAAAAGCAACAGAAAGATATCGACTCAACTAAGGACTTGATCG 1237
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1158 CTCAGAATGCAGCTTGGGAAAAGCAACAGAAAGAGATCGATTCAACTAAGGACTTGATCG 1217
Query 1238 CCAGGCTTGGTGCTGGTGCCAATTCTGGTCGTGCTTCCACTGCAGAAAAGAAACTAGAGA 1297
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1218 CTAGGCTTGGTGCTGGTGCCAATTCTGGTCGTGCTTCTACTGCAGAAAAGAAACTAGAGA 1277
Query 1298 AGCTTCAAGAACAGGAGCTAATAGAGAAGCCATTTCAGCGGAAGCAGATGAAGATTAGGT 1357
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1278 AGCTTCAAGAACAGGAGCTAATAGAAAAGCCATTTCAGCGGAAACAGATGAAGATAAGGT 1337
Query 1358 TTCCAGAGCGTGGGACAAGTGGAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTT 1417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TTCCAGAGCGTGGAACAAGTGGAAGATCGGTAGTCAATGTTAAAAACATTGATTTTGGTT 1397
Query 1418 TCGAGGATAAGATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAGGGGAGAAAATCG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TCGAGGATAAGATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAGGGGAGAAAATCG 1457
Query 1478 CCATCCTTGGGCCAAACGGTTGTGGGAAA-AGTACGTTATTGAAGCTAATTATGGGTTTA 1536
|||| |||| || |||||||| || ||| ||||||||||||||| ||||||||||||||
Sbjct 1458 CCATTATTGGCCCGAACGGTTGCGG-AAAGAGTACGTTATTGAAGTTAATTATGGGTTTA 1516
Query 1537 GAGAAGCCTGTGAAAGGTGAAGTTATTCTTGGAGAGCACAATGTACTGCCAAACTACTTT 1596
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GAAAAGCCTATGAAAGGTGAAGTTATTCTTGGAGAGCACAATGTACTGCCAAACTACTTT 1576
Query 1597 GAACAGAATCAGGCTGAGGTCCTTGATTTGGATAAAACAGTGCTTGAAACTGTTTGTGAA 1656
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1577 GAACAGAATCAGGCCGAGGTCCTTGATTTGGATAAAACAGTGCTTGAAACAGTTTGTGAA 1636
Query 1657 GCTGCAGAAGACTGGAGAAGTGATGATATAAAAGGTCTTCTTGGACGCTGCAACTTCAAA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GCTGCAGAAGACTGGAGAAGTGATGATATAAAAGGTCTTCTTGGACGCTGCAACTTCAAA 1696
Query 1717 GCAGACATGCTTGATCGAAAGGTCTCTCTTTTAAGTGGTGGGGAGAAAGCGCGTCTTGCT 1776
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1697 GCAGACATGCTTGATCGAAAGGTCTCTCTTTTAAGCGGTGGTGAGAAAGCGCGTCTTGCT 1756
Query 1777 TTCTGCAAATTCATGGTGACGCCATCTACTTTACTCGTTTTGGACGAACCAACCAATCAC 1836
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||
Sbjct 1757 TTCTGCAAATTCATGGTGACGCCATCAACTTTTCTCGTTCTGGACGAACCAACTAATCAC 1816
Query 1837 TTAGACATTCCTTCAAAAGAAATGCTCGAGGAAGCGATAAACGAGTACCAAGGTACAGTC 1896
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1817 TTAGACATTCCTTCAAAAGAAATGCTTGAGGAAGCGATAAACGAGTACCAAGGTACAGTC 1876
Query 1897 ATTGCGGTATCCCACGATCGATACTTCATCAAACAAATCGTTAACAGAGTGATAGAAGTA 1956
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1877 ATCGCGGTATCCCACGATCGATACTTTATCAAACAAATCGTTAACAGAGTGATAGAAGTA 1936
Query 1957 GAAGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATTATTACTTGGAGAAGAATCTG 2016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 GAGGATGGTTGTTTAGAAGATTATGCAGGCGACTACAATTATTACTTGGAGAAGAATCTG 1996
Query 2017 GATGCTAGAACAAAGGAGCTAGAGAGAGAAGCAGAGCTAGAAGAGAAAGCACCAAAAGTG 2076
|||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1997 GATGCTAGGGCAAAAGAGCTGGAGAGAGAAGCAGAGCTAGAAGAGAAAGCTCCAAAAGTG 2056
Query 2077 AAGGCAAAGTCAAAGATGTCAAAAGCAGAGAAAGAAGCGAGGAAGAAGCAGAAGATGCAA 2136
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2057 AAGGCAAAGTCAAAGATGTCAAAAGCTGAGAAAGAAGCGAGGAAGAAGCAGAAGATGCAA 2116
Query 2137 GCATTTCAACAAGCTAAACAGAAGTCAAAGGCTAGCAAGAACTCCAAGAGATGGAACTGA 2196
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2117 GCGTTTCAACAAGCTAAACAGAAATCAAAGGCTAGCAAGAACTCCAAGAGATGGAACTGA 2176
Query 2197 ACAAACATTGAAAACTGAAAGGAGTCAAGATTTATAAAAAA 2237
||||||| ||||||||||||||||||||||||| ||||||
Sbjct 2177 ACAAACACGGAAAACTGAAAGGAGTCAAGATTTACAAAAAA 2217
Score = 213 bits (115), Expect = 5e-54
Identities = 142/154 (92%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 2268 TGTGGAATGTATATAGATATTACTTTTAGAAATGCAGAGAGAGTATTAATGTTTCTACAA 2327
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 TGTGGAATGTATATAGATA-TACTTTTAGAAATGCAGAGAGAGTATTAATGTTTCTACAA 2276
Query 2328 CACTTGAGCCCCATTGGGTAAAAATTAAGAAACTTTATT--CTCAAACATGGAACCGAAC 2385
||||||||||||||||||| ||| ||||||||||||||| |||||| ||||| |||
Sbjct 2277 CACTTGAGCCCCATTGGGTTAAA-TTAAGAAACTTTATTGTCTCAAAAATGGAT--GAAT 2333
Query 2386 CGAACCAAACCATTGAATTTCAGTGCAAAACCTA 2419
|||| | |||||||||||||||||||||||||||
Sbjct 2334 CGAATCGAACCATTGAATTTCAGTGCAAAACCTA 2367
> Ahg487818 jgi|Araly1|487818|fgenesh2_kg.6__952__AT5G09930.1
Length=2037
Score = 1753 bits (949), Expect = 0.0
Identities = 1574/1872 (84%), Gaps = 58/1872 (3%)
Strand=Plus/Plus
Query 350 CCGATCGGAAAC-GAAACGGGAAG-AGTTCCAAA-AACGGAGCTTCTGGGATATCTTCAG 406
|||||||||| | | | ||| ||| | | |||| || || || ||| ||| || || |
Sbjct 191 CCGATCGGAAGCTG-ATCGGTAAGCA-AT-CAAACAATGGTGCGTCTTCGATTTCGTCTG 247
Query 407 GTGTGAAG-CTAGAGAACATAAGGAAAAGCTACAAAGGCGTGACTGTGCTTAAA-GATGT 464
| ||| || || |||||||| || || ||||| ||||||| || | || |||| |||||
Sbjct 248 GAGTG-AGACTTGAGAACATTAGTAAGAGCTATGAAGGCGTTACAGGGC-TAAAGGATGT 305
Query 465 GACATGGGAAGTGAAGAGAGGTGAGAAAGTAGGGTTAGTTGGTGTGAACGGAGCTGGGAA 524
||| ||||||||||||| ||| || |||||||| ||| | || || ||||| || |||||
Sbjct 306 GACTTGGGAAGTGAAGAAAGGAGAAAAAGTAGGTTTAATCGGCGTTAACGGTGCGGGGAA 365
Query 525 GACGACTCAGCTCAGGATTATCACTGGTCAAGAAGAGCCTGATTCTGGTAACGTAATCAA 584
|||||| ||||||| ||| || || ||||||||||| |||||||| || ||||| ||
Sbjct 366 GACGACACAGCTCAAGATCATAACGGGTCAAGAAGAACCTGATTCAGGAAACGTGATTTG 425
Query 585 GGCCAAACCCAATATGAAAGTAGCTTTCTTGAGCCAGGAATTTGAGGTTTCGATGAGTAA 644
||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||| | ||
Sbjct 426 GGCCAAACCCAATTTGAAAGTTGCTTTCTTGAGTCAAGAATTCGAGGTTTCGATGGGGAA 485
Query 645 GACTGTGAGGGAAGAGTTCATGACTGC-TTTCAAGGAAGAGATGGAGATTA-CTGA-GAA 701
||| |||| |||||||||||||| ||| ||| |||||||||||||| | || | | |||
Sbjct 486 GACAGTGAAGGAAGAGTTCATGAGTGCGTTT-AAGGAAGAGATGGA-AGTAGC-AAGGAA 542
Query 702 GCTTGAGAAAGTT-CAGAAGGCTATTGAGGGATCTGTTGATGATTTGGATCTTATGGGAA 760
||||||| | ||| |||||||| ||||| | | ||||||||||||| || || |||||||
Sbjct 543 GCTTGAG-AGGTTGCAGAAGGCGATTGAAGAAGCTGTTGATGATTTAGAACTAATGGGAA 601
Query 761 GGTTATTAGATGAATTTGATTTGTTGCAGAGACGAGCTC-AG-GCTGTGAATTTAGATTC 818
|||| |||| ||||| |||||||||||||||||||||| || | | || |||| |||||
Sbjct 602 AGTTACTAGACGAATTCGATTTGTTGCAGAGACGAGCTCAAGAGGT-TG-ATTTGGATTC 659
Query 819 CGTTGATGCTAAGATTAGTAAG-TTGATGCCGGAATTAGGG-TT-TGCTCCTGAGGATGC 875
|| |||||||| || |||||| || ||| ||||||||||| || || | | ||||||||
Sbjct 660 TGTCGATGCTAAAATCAGTAAGCTT-ATGTCGGAATTAGGGCTTGTG-T-CGGAGGATGC 716
Query 876 TGATAGGCTTGTGGCTTCGTTTAGTGGTGGATGGCAAATGAGAATGTCACTTGGAAAGAT 935
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 717 AGATAGGCTTGTGGCTTCTTTTAGTAGTGGATGGCAAATGAGAATGTCACTTGGGAAGAT 776
Query 936 TTTGCTTCAGGATCCAGATTTGCTGCTACTT-GATGAGCCGACAAATCATTTGGATCTTG 994
|||||||||| |||||||||| |||||| || |||||||| || ||||||||||||||||
Sbjct 777 TTTGCTTCAGAATCCAGATTTACTGCTA-TTGGATGAGCCAACGAATCATTTGGATCTTG 835
Query 995 ATACTATTGAGTGGCTTGAAGGTTATTTGCAA-AAGCAAGATGTGCCTATGGTTATTATT 1053
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||
Sbjct 836 ATACTATTGAGTGGCTTGAAGGTTACTTG-AATAAGCAAGATGTGCCTATGGTTATAATA 894
Query 1054 TCACATGACAGAGCCTTTCTTGATCAGTTATGTACTAAAATTGTGGAAACTGAGATGGGT 1113
|||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 895 TCACATGACAGAGCGTTTCTTGATCAGTTGTGTACTAAAATTGTGGAAACCGAAATGGGA 954
Query 1114 GTGTCCAGGACATTT-GAGGGTAATTATTCTCAGTATGTGATCTCAAAGGCTGAGTGGAT 1172
|| || ||||| ||| ||||||||||| ||||||||||| || |||||||| |||||| |
Sbjct 955 GTTTCGAGGAC-TTTCGAGGGTAATTACTCTCAGTATGTAATTTCAAAGGCAGAGTGGGT 1013
Query 1173 CGAAACTCAGAATGCAGCGTGGGAAAAGCAACAGAAAGATATCGACTCAACTAAGGACTT 1232
|||| ||||| |||| || ||||| |||||||||||||| || || |||| ||||| ||
Sbjct 1014 CGAAGCTCAGTATGCTGCTTGGGAGAAGCAACAGAAAGAGATTGAAGCAACAAAGGATTT 1073
Query 1233 GATCGCCAGGCTTGGTGCTGGTGCCAATTCTGGTCGTGCTTCCACTGCAGAAAAGAAACT 1292
||| | ||||| ||||||| || ||||||||||| ||||| | ||||||||||||||
Sbjct 1074 GATTACTAGGCTAAGTGCTGGAGCAAATTCTGGTCGAGCTTCTTCAGCAGAAAAGAAACT 1133
Query 1293 AGAGAAGCTTCAAGAACAGGAGCTAATAGAGAAGCCATTTCAGCGGAAGCAGATGAAGAT 1352
||||||||||||||| |||||| |||||||||||||||||||||||| || ||||| ||
Sbjct 1134 GGAGAAGCTTCAAGAAGAGGAGCAAATAGAGAAGCCATTTCAGCGGAAACAAATGAAAAT 1193
Query 1353 TAGGTTTCCAGAGCGTGGGAC-AAGTGGAAGATCGGTAGTCAATGTTAAAAA-CATTG-A 1409
|||||||| || |||| | ||| |||||||| ||||||| |||||| || | ||| |
Sbjct 1194 CAGGTTTCCGGAATGTGG-ATTAAGCGGAAGATCTGTAGTCACTGTTAAGAATC-TTGGA 1251
Query 1410 TTTTGGTTTCGAGGATAAGATGCTATTTAAGAAGGCTAATCTATCAATAGAAAGAGGGGA 1469
||| ||||| |||||||||||| ||||||| ||||| |||||| | ||||||||||| ||
Sbjct 1252 TTT-GGTTTTGAGGATAAGATGTTATTTAACAAGGCAAATCTAGCGATAGAAAGAGGAGA 1310
Query 1470 GAAAATCGCCATCCTTGGGCCAAACGGTTGTGGGAAAAGTACGTTATTGAAGCTAATTAT 1529
|||| |||| || |||| |||||||| || || |||||||| || ||||| || |||||
Sbjct 1311 GAAAGTCGCTATAATTGGTCCAAACGGGTGCGGTAAAAGTACATTGTTGAAACTGATTAT 1370
Query 1530 GGGTTTAGAGAAGCCTGTGAAAGGTGAAGTTATTCTTGGAGAGCACAATGTACT-GCCAA 1588
|||||| ||||||||| ||| ||||||||| ||||| || ||||||||||| || ||| |
Sbjct 1371 GGGTTTGGAGAAGCCTATGAGAGGTGAAGTGATTCTCGGGGAGCACAATGT-CTTGCCTA 1429
Query 1589 ACTACTTTGAACAGAATCAGGCTGAGG-TCCTTGATTTGGATAAAACAGTGCTTGAAACT 1647
||||||| |||||||||||||| |||| || | |||||||||||||| ||| |||| ||
Sbjct 1430 ACTACTTCGAACAGAATCAGGCAGAGGCTC-TAGATTTGGATAAAACTGTGATTGAGACA 1488
Query 1648 GTTTGT-GAAGCTGCAGAAGACTGGAGAAGTGATGATATAAAAGGTCTTCTTGGACGCTG 1706
||| || |||||||| | ||| ||||||| |||||||||||||| ||||||||| |||||
Sbjct 1489 GTT-GTTGAAGCTGCTGTAGATTGGAGAATTGATGATATAAAAGCTCTTCTTGGTCGCTG 1547
Query 1707 CAACTTCAAAGCAGACATGCTTG-ATCGAAAGGTCTCTCTTTTAAGTGGTGGGGAGAAAG 1765
|||||||||||| |||||| ||| || |||||||||||||||| |||||||| ||||| |
Sbjct 1548 CAACTTCAAAGCTGACATG-TTGGATAGAAAGGTCTCTCTTTTGAGTGGTGGTGAGAAGG 1606
Query 1766 CGCGTCTTGCTTTCTGCAAATTCATGGTGACGCCATCTACTTTACTCGTTTTGGACGAAC 1825
| || ||||||||||||||||||||||||| ||||| ||| |||| || ||||||||||
Sbjct 1607 CACGCCTTGCTTTCTGCAAATTCATGGTGAAACCATCCACTCTACTTGTGTTGGACGAAC 1666
Query 1826 CAACCAATCACTTAGACATTCCTTCAAAAGAAATGCTCGAGGAAGCGATAAACGAGTACC 1885
| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1667 CCACCAATCACTTAGACATACCTTCAAAAGAAATGCTTGAGGAAGCGATAAATGAGTACA 1726
Query 1886 AAGGTACAGTCATTGCGGTATCCCACGATCGATACTTCATCAAACAAATCGTTAACAGAG 1945
|||| || ||||| || || || |||||| |||||||||| |||||||| ||||||||||
Sbjct 1727 AAGGCACGGTCATCGCAGTCTCACACGATAGATACTTCATTAAACAAATTGTTAACAGAG 1786
Query 1946 TGATAGAAGT-AGAAGATGGTTGTTTAGAAG-ATTATGCAGGCGACTACAATTATTACTT 2003
| || ||||| ||| |||||| ||||| | | | |||||||| ||||||||||||||| |
Sbjct 1787 TAATTGAAGTCAGA-GATGGTGGTTTA-ATGGACTATGCAGGAGACTACAATTATTACCT 1844
Query 2004 GGAGAAGAATCTGGATGCTAGAACAAAGGAGCTAGAGAGAGAAGCAGAGCTAGAAGAGAA 2063
||||||||| | || |||||| ||| |||||| ||||| |||||||| | || || ||
Sbjct 1845 AGAGAAGAATGTTGAAGCTAGAGCAAGGGAGCTGGAGAGGGAAGCAGAATTGGAGGAAAA 1904
Query 2064 AGCACCAAAAGTGAAGGCAAAGTCAAAGATGTCAAAAGCAGAGAAAGAAGCGA-GGAAGA 2122
||| ||||||||||| |||||||||||||||||||| || |||| |||||| | ||||||
Sbjct 1905 AGCTCCAAAAGTGAAAGCAAAGTCAAAGATGTCAAAGGCTGAGAGAGAAGC-ACGGAAGA 1963
Query 2123 AGCAGAAGATGCAAGCATTTCAA-CAAGCTAAACAGAAGTCAAAGGCTAGCAAGAACT-C 2180
|||| |||||| |||| |||||| | | ||| | ||||| ||| | ||||| || | |
Sbjct 1964 AGCAAAAGATGAAAGCGTTTCAAGCTTCCAAAA-ACAAGTCTAAGTCCAGCAAAAA-TGC 2021
Query 2181 CAAGAGATGGAA 2192
||||||||||||
Sbjct 2022 CAAGAGATGGAA 2033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91530858735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5